Variant report

Variant	rs371288343
Chromosome Location	chr6:37503740-37503741
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37497734..37501605-chr6:37502729..37507040,5	K562	blood:
2	chr6:37479736..37486031-chr6:37501228..37507298,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FTSJD2-1	chr6:37503308-37509148	XLOC_005278
2	lnc-FTSJD2-1	chr6:37503308-37506306	ENSG00000204110.5

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv462914	chr6:37502585-37517485	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv602954	chr6:37502585-37517485	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37493800-37514000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:37502000-37504400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:37502800-37503800	Bivalent Enhancer	Fetal Kidney	kidney
4	chr6:37502800-37504000	Bivalent Enhancer	Fetal Brain Male	brain
5	chr6:37502800-37505800	Bivalent Enhancer	Fetal Lung	lung
6	chr6:37503000-37503800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:37503000-37503800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr6:37503000-37504000	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr6:37503000-37504000	Bivalent Enhancer	Fetal Thymus	thymus
10	chr6:37503200-37503800	Bivalent Enhancer	Colonic Mucosa	Colon
11	chr6:37503200-37504000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:37503200-37504000	Bivalent Enhancer	Fetal Intestine Large	intestine
13	chr6:37503200-37504200	Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr6:37503200-37504200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
15	chr6:37503200-37504400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
16	chr6:37503200-37504400	Enhancers	Liver	Liver
17	chr6:37503200-37504400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
18	chr6:37503200-37504600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:37503200-37504600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:37503200-37504600	Bivalent Enhancer	Placenta	Placenta
21	chr6:37503200-37505000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
22	chr6:37503200-37505000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:37503400-37503800	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:37503400-37503800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:37503400-37503800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
26	chr6:37503400-37503800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
27	chr6:37503400-37503800	Bivalent Enhancer	Adipose Nuclei	Adipose
28	chr6:37503400-37503800	Bivalent Enhancer	HUVEC	blood vessel
29	chr6:37503400-37504000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
30	chr6:37503400-37504000	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
31	chr6:37503400-37504000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:37503400-37504000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:37503400-37504000	Flanking Active TSS	Right Atrium	heart
34	chr6:37503400-37504000	Enhancers	Spleen	Spleen
35	chr6:37503400-37504000	Flanking Active TSS	HMEC	breast
36	chr6:37503400-37504000	Bivalent Enhancer	K562	blood
37	chr6:37503400-37504000	Flanking Bivalent TSS/Enh	NHEK	skin
38	chr6:37503400-37504200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:37503400-37504200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:37503400-37504200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
41	chr6:37503400-37504200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
42	chr6:37503400-37504200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:37503400-37504200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
44	chr6:37503400-37504200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
45	chr6:37503400-37504200	Bivalent Enhancer	Esophagus	oesophagus
46	chr6:37503400-37504200	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr6:37503400-37504200	Flanking Bivalent TSS/Enh	Thymus	Thymus
48	chr6:37503400-37504200	Flanking Active TSS	GM12878-XiMat	blood
49	chr6:37503400-37504400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:37503400-37504400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell

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