Variant report

Variant	rs371323905
Chromosome Location	chr6:33797285-33797286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33794679..33797387-chr6:33799948..33801747,2	MCF-7	breast:
2	chr6:33755377..33757050-chr6:33795236..33797558,2	MCF-7	breast:
3	chr6:33795530..33798300-chr6:33803409..33806426,4	MCF-7	breast:
4	chr6:33796210..33797861-chr6:33802037..33804475,2	MCF-7	breast:
5	chr6:33795996..33798344-chr6:33806425..33808689,2	K562	blood:

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032074	chr6:33795671-33835988	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv13645	chr6:33796274-33797809	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2289624	chr6:33797108-33797536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1002306	chr6:33797224-33797809	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33793000-33798800	Weak transcription	Spleen	Spleen
2	chr6:33794600-33799400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:33795000-33799600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:33795800-33798000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:33795800-33798600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:33796000-33798000	Enhancers	Right Ventricle	heart
7	chr6:33796000-33798200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:33796400-33797800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:33796600-33798000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:33796800-33798400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:33796800-33798800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:33797000-33797800	Enhancers	Stomach Smooth Muscle	stomach
13	chr6:33797000-33798200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:33797000-33798800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:33797200-33797800	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:33797200-33797800	Weak transcription	Ovary	ovary
17	chr6:33797200-33798200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:33797200-33798800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:33797200-33801800	Weak transcription	A549	lung
20	chr6:33797200-33805600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links