Variant report

Variant	rs371450801
Chromosome Location	chr10:112835786-112835787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:112835780-112836448	H1-hESC	embryonic stem cell:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850
2	REST	chr10:112835739-112837184	H1-neurons	neurons:	n/a	chr10:112836820-112836830 chr10:112837090-112837103 chr10:112836237-112836246
3	ELF1	chr10:112835583-112836490	GM12878	blood:	n/a	n/a
4	CTCF	chr10:112835640-112835790	GM12875	blood:	n/a	n/a
5	RAD21	chr10:112835596-112837208	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
6	CTCF	chr10:112835667-112836460	HCT-116	colon:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850
7	CTCF	chr10:112835640-112835790	AoAF	blood vessel:	n/a	n/a
8	SP4	chr10:112835764-112836200	H1-hESC	embryonic stem cell:	n/a	n/a
9	RAD21	chr10:112835775-112836439	A549	lung:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836036-112836049
10	CTCF	chr10:112835561-112837016	SK-N-SH	brain:	n/a	chr10:112836519-112836537 chr10:112836045-112836053 chr10:112836706-112836719 chr10:112836035-112836048 chr10:112836522-112836531 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112836932-112836941 chr10:112835841-112835850 chr10:112836522-112836535
11	RAD21	chr10:112835123-112836993	SK-N-SH	brain:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539 chr10:112835233-112835246
12	MAZ	chr10:112835786-112836330	IMR90	lung:	n/a	n/a
13	RAD21	chr10:112835734-112836726	ECC-1	luminal epithelium:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
14	RAD21	chr10:112835723-112836869	MCF-7	breast:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
15	CTCF	chr10:112835770-112836438	HCT-116	colon:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850
16	RAD21	chr10:112835697-112836982	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
17	CTBP2	chr10:112835669-112837158	H1-hESC	embryonic stem cell:	n/a	n/a
18	SMC3	chr10:112835621-112837181	SK-N-SH	brain:	n/a	chr10:112836970-112836980 chr10:112836521-112836535 chr10:112836525-112836535 chr10:112836044-112836058
19	RAD21	chr10:112835761-112836399	MCF-7	breast:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836036-112836049
20	CTCF	chr10:112835786-112836918	A549	lung:	n/a	chr10:112836519-112836537 chr10:112836045-112836053 chr10:112836706-112836719 chr10:112836035-112836048 chr10:112836522-112836531 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850 chr10:112836522-112836535
21	CTCF	chr10:112835781-112836375	MCF-7	breast:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850
22	CTCF	chr10:112835686-112836665	MCF-7	breast:	n/a	chr10:112836519-112836537 chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836522-112836531 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850 chr10:112836522-112836535
23	RAD21	chr10:112835717-112836563	HCT-116	colon:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
24	RAD21	chr10:112835736-112836267	SK-N-SH_RA	brain:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836036-112836049
25	CTCF	chr10:112835771-112836264	H1-hESC	embryonic stem cell:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850
26	PAX5	chr10:112835738-112836279	GM12878	blood:	n/a	chr10:112836026-112836035
27	RAD21	chr10:112835764-112836386	A549	lung:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836036-112836049
28	RAD21	chr10:112835663-112836619	HCT-116	colon:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
29	CTCF	chr10:112835710-112835797	GM12892	blood:	n/a	n/a
30	ZBTB7A	chr10:112835773-112837270	ECC-1	luminal epithelium:	n/a	chr10:112836115-112836124 chr10:112836927-112836938

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112835556..112836368-chr10:113357671..113358964,3	MCF-7	breast:
2	chr10:112835558..112836069-chr10:112858564..112859533,2	MCF-7	breast:

Variant related genes	Relation type
ADRA2A	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896004	chr10:112834763-112842961	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112835400-112835800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
2	chr10:112835400-112835800	Enhancers	Fetal Brain Male	brain
3	chr10:112835400-112835800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr10:112835400-112836000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
5	chr10:112835400-112836000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr10:112835400-112836000	Flanking Active TSS	Fetal Brain Female	brain
7	chr10:112835400-112836000	Bivalent Enhancer	Fetal Heart	heart
8	chr10:112835400-112837000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:112835400-112838000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:112835600-112835800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:112835600-112835800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr10:112835600-112835800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:112835600-112835800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
14	chr10:112835600-112835800	Bivalent Enhancer	Primary B cells from cord blood	blood
15	chr10:112835600-112835800	Bivalent Enhancer	Primary T cells from cord blood	blood
16	chr10:112835600-112835800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
17	chr10:112835600-112835800	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
18	chr10:112835600-112835800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
19	chr10:112835600-112835800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
20	chr10:112835600-112835800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:112835600-112835800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:112835600-112835800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:112835600-112835800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:112835600-112835800	Bivalent Enhancer	Liver	Liver
25	chr10:112835600-112835800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
26	chr10:112835600-112835800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
27	chr10:112835600-112835800	Bivalent/Poised TSS	Colonic Mucosa	Colon
28	chr10:112835600-112835800	Bivalent Enhancer	Colon Smooth Muscle	Colon
29	chr10:112835600-112835800	Bivalent Enhancer	Fetal Lung	lung
30	chr10:112835600-112835800	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr10:112835600-112835800	Bivalent Enhancer	Fetal Stomach	stomach
32	chr10:112835600-112835800	Flanking Active TSS	Ovary	ovary
33	chr10:112835600-112835800	Enhancers	Pancreas	Pancrea
34	chr10:112835600-112835800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
35	chr10:112835600-112835800	Flanking Active TSS	Right Atrium	heart
36	chr10:112835600-112835800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
37	chr10:112835600-112835800	Bivalent/Poised TSS	HSMM	muscle
38	chr10:112835600-112836000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:112835600-112836000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:112835600-112836000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:112835600-112836000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:112835600-112836000	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:112835600-112836000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
44	chr10:112835600-112836000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
45	chr10:112835600-112836000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
46	chr10:112835600-112836000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
47	chr10:112835600-112836000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:112835600-112836000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:112835600-112836000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:112835600-112836000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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