Variant report

Variant	rs371480247
Chromosome Location	chr15:35102772-35102773
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC114546.1-3	chr15:35102697-35105124	ENSG00000250007

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv569133	chr15:34881304-35142566	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35096200-35103000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:35100200-35102800	Enhancers	Hela-S3	cervix
3	chr15:35100400-35103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:35100400-35103000	Weak transcription	Right Ventricle	heart
5	chr15:35100600-35102800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:35100800-35108200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:35102000-35103600	Enhancers	HMEC	breast
8	chr15:35102000-35105600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:35102000-35105800	Enhancers	HSMMtube	muscle
10	chr15:35102000-35106400	Enhancers	HSMM	muscle
11	chr15:35102000-35106400	Enhancers	NHDF-Ad	bronchial
12	chr15:35102000-35106600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:35102000-35106600	Enhancers	Osteobl	bone
14	chr15:35102200-35103400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr15:35102200-35103400	Enhancers	Stomach Smooth Muscle	stomach
16	chr15:35102200-35103400	Enhancers	K562	blood
17	chr15:35102200-35104000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:35102200-35104000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:35102200-35104000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:35102200-35104200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:35102200-35106200	Enhancers	NHLF	lung
22	chr15:35102200-35106400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:35102400-35103600	Enhancers	A549	lung
24	chr15:35102600-35103000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr15:35102600-35103200	Enhancers	Fetal Heart	heart
26	chr15:35102600-35103800	Enhancers	Fetal Muscle Leg	muscle

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