Variant report

Variant	rs371480554
Chromosome Location	chr6:150003246-150003247
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149979522..149981707-chr6:150002661..150005407,2	K562	blood:
2	chr6:149995998..149998613-chr6:150000723..150004111,3	MCF-7	breast:
3	chr6:149996900..150000270-chr6:150001937..150004425,4	K562	blood:
4	chr6:149968511..149970229-chr6:150002513..150004622,2	K562	blood:

Variant related genes	Relation type
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149977200-150022600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149977800-150005800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:149977800-150020600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:149978000-150029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:149980000-150003400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:149980000-150008000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:149980600-150024800	Strong transcription	Fetal Thymus	thymus
8	chr6:149980800-150005800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:149981200-150018800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr6:149982400-150004400	Weak transcription	Right Atrium	heart
11	chr6:149982800-150003400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:149983400-150004200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:149983800-150004400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:149983800-150005800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr6:149984600-150004400	Weak transcription	A549	lung
16	chr6:149987000-150036800	Weak transcription	Hela-S3	cervix
17	chr6:149988200-150008000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:149990400-150003600	Weak transcription	Pancreas	Pancrea
19	chr6:149990400-150004200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:149990600-150004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:149991000-150004600	Weak transcription	Aorta	Aorta
22	chr6:149992000-150004200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:149994600-150012600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:149995800-150004400	Weak transcription	Stomach Mucosa	stomach
25	chr6:149996800-150004400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:149997200-150004400	Weak transcription	Psoas Muscle	Psoas
27	chr6:149997800-150004200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:149997800-150004400	Weak transcription	Brain Germinal Matrix	brain
29	chr6:149997800-150004400	Weak transcription	Esophagus	oesophagus
30	chr6:149997800-150004400	Weak transcription	Ovary	ovary
31	chr6:149997800-150004400	Weak transcription	Right Ventricle	heart
32	chr6:149997800-150004400	Weak transcription	Spleen	Spleen
33	chr6:149997800-150027400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:149998000-150003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:149998000-150003600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:149998000-150004200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:149998000-150004200	Weak transcription	Fetal Brain Female	brain
38	chr6:149998000-150004200	Weak transcription	HUVEC	blood vessel
39	chr6:149998000-150004400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr6:149998000-150004400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:149998000-150004400	Weak transcription	Brain Anterior Caudate	brain
42	chr6:149998000-150004400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:149998000-150004400	Weak transcription	Gastric	stomach
44	chr6:149998000-150004400	Weak transcription	Left Ventricle	heart
45	chr6:149998000-150004400	Weak transcription	Lung	lung
46	chr6:149998000-150004800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:149998000-150020800	Weak transcription	Small Intestine	intestine
48	chr6:149998000-150029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:149998200-150004400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:149998400-150004400	Weak transcription	NHLF	lung

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