Variant report

Variant	rs371501106
Chromosome Location	chr4:48688369-48688370
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:48687679..48689776-chr4:48780606..48783183,3	MCF-7	breast:
2	chr4:48685624..48689755-chr4:48691004..48694286,4	K562	blood:
3	chr4:48683077..48685040-chr4:48687843..48689972,2	K562	blood:
4	chr4:48685998..48688837-chr4:48699802..48703602,5	K562	blood:
5	chr4:48687862..48689667-chr4:48836444..48838166,2	MCF-7	breast:
6	chr4:48682524..48684809-chr4:48686998..48690088,3	K562	blood:

Variant related genes	Relation type
ENSG00000075539	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002674	chr4:48507608-49032909	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv537087	chr4:48507608-49032909	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1010923	chr4:48575156-49083089	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv537088	chr4:48575156-49083089	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1013762	chr4:48580484-49032909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv537089	chr4:48580484-49032909	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv999203	chr4:48645887-48735512	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1802666	chr4:48646594-48721327	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1013914	chr4:48652784-48728934	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv537090	chr4:48652784-48728934	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv1796692	chr4:48686817-48726266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv1792683	chr4:48686817-48764009	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv1795181	chr4:48686817-48764009	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv1793455	chr4:48686817-48859142	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48621200-48729400	Weak transcription	Thymus	Thymus
2	chr4:48657400-48688600	Weak transcription	Brain Angular Gyrus	brain
3	chr4:48657600-48688600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:48663600-48700200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:48668200-48689400	Weak transcription	HSMM	muscle
6	chr4:48670000-48691000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:48670200-48700000	Weak transcription	Esophagus	oesophagus
8	chr4:48670200-48702000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr4:48670200-48702000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:48670400-48696000	Weak transcription	Left Ventricle	heart
11	chr4:48671200-48688600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:48671400-48696000	Weak transcription	Right Ventricle	heart
13	chr4:48674800-48689600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:48674800-48689600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:48675000-48688800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:48679000-48700000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:48680200-48692800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:48680600-48699600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:48683200-48688600	Weak transcription	Brain Anterior Caudate	brain
20	chr4:48683200-48691000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:48683400-48689600	Weak transcription	Primary T cells from cord blood	blood
22	chr4:48683400-48699600	Weak transcription	Psoas Muscle	Psoas
23	chr4:48683600-48692400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr4:48683600-48700000	Weak transcription	Fetal Intestine Large	intestine
25	chr4:48683600-48700400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr4:48683800-48688800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:48684000-48688400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr4:48684000-48690400	Weak transcription	Liver	Liver
29	chr4:48684000-48698400	Weak transcription	NHEK	skin
30	chr4:48684200-48695400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:48685000-48688600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:48685000-48700400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:48685200-48688600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:48685200-48688600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:48686400-48694200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr4:48686400-48699600	Weak transcription	Placenta	Placenta
37	chr4:48686400-48700000	Weak transcription	Dnd41	blood
38	chr4:48686600-48688600	Weak transcription	Adipose Nuclei	Adipose
39	chr4:48686600-48688600	Weak transcription	Brain Substantia Nigra	brain
40	chr4:48686600-48689000	Weak transcription	Stomach Mucosa	stomach
41	chr4:48686600-48689600	Weak transcription	A549	lung
42	chr4:48686600-48693200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:48686600-48694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:48686600-48694200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:48686800-48688800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr4:48686800-48689000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:48686800-48695000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr4:48686800-48700200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr4:48686800-48708800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr4:48687000-48688600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links