Variant report

Variant	rs371531776
Chromosome Location	chr3:119435004-119435005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460834	chr3:119384163-119458851	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv591390	chr3:119384163-119458851	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv591391	chr3:119403145-119442572	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv819215	chr3:119434334-119435015	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119422200-119458200	Weak transcription	Aorta	Aorta
2	chr3:119422600-119435600	Weak transcription	Pancreas	Pancrea
3	chr3:119422800-119440000	Weak transcription	Brain Angular Gyrus	brain
4	chr3:119423000-119463000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:119423000-119464400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:119423200-119436000	Weak transcription	Brain Anterior Caudate	brain
7	chr3:119423200-119464200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:119423200-119471600	Weak transcription	Fetal Kidney	kidney
9	chr3:119423400-119435800	Weak transcription	Ovary	ovary
10	chr3:119423400-119458200	Weak transcription	Brain Substantia Nigra	brain
11	chr3:119423800-119449000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:119428800-119469200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:119431000-119435200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:119431200-119470400	Weak transcription	Gastric	stomach
15	chr3:119432600-119436600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:119433600-119437000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:119433800-119435800	Enhancers	HepG2	liver
18	chr3:119433800-119437200	Enhancers	Liver	Liver
19	chr3:119434000-119437400	Enhancers	Fetal Intestine Large	intestine
20	chr3:119434200-119435200	Weak transcription	Fetal Intestine Small	intestine
21	chr3:119434200-119436600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:119434200-119436800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:119434200-119438200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:119434600-119436800	Enhancers	Duodenum Mucosa	Duodenum
25	chr3:119434800-119435200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:119434800-119436600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:119434800-119438000	Weak transcription	Fetal Stomach	stomach
28	chr3:119435000-119435400	Strong transcription	Colon Smooth Muscle	Colon
29	chr3:119435000-119438800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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