Variant report

Variant	rs371551212
Chromosome Location	chr3:133293635-133293636
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:133164640..133168534-chr3:133291750..133294077,5	MCF-7	breast:
2	chr21:38737416..38739692-chr3:133291408..133294289,2	MCF-7	breast:
3	chr3:133207179..133209818-chr3:133291516..133294111,3	MCF-7	breast:
4	chr3:132440102..132442906-chr3:133291126..133294877,5	K562	blood:
5	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
6	chr3:133293596..133295529-chr3:133326380..133328140,2	MCF-7	breast:
7	chr10:71930068..71930946-chr3:133292953..133293844,2	Hela-S3	cervix:
8	chr3:132439752..132442432-chr3:133291591..133294160,3	K562	blood:
9	chr19:47291403..47292001-chr3:133293045..133294029,2	NB4	blood:
10	chr3:133207094..133210649-chr3:133290648..133294454,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273210	Chromatin interaction
ENSG00000170819	Chromatin interaction
ENSG00000113971	Chromatin interaction
ENSG00000249993	Chromatin interaction
ENSG00000248724	Chromatin interaction
ENSG00000163781	Chromatin interaction
ENSG00000157540	Chromatin interaction
ENSG00000214301	Chromatin interaction
ENSG00000079332	Chromatin interaction
ENSG00000105281	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3393233	chr3:133291062-133294360	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
2	esv3356701	chr3:133291487-133294035	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
3	esv3331679	chr3:133291512-133294210	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	esv3423184	chr3:133291787-133294635	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
5	esv10255	chr3:133292719-133293670	Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
6	esv1800456	chr3:133292746-133294203	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133291200-133294000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:133291400-133293800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:133291600-133293800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:133291600-133293800	Active TSS	Psoas Muscle	Psoas
5	chr3:133291600-133294000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:133291600-133294000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr3:133291600-133294000	Active TSS	Right Ventricle	heart
8	chr3:133291600-133294400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr3:133291600-133295000	Active TSS	Colonic Mucosa	Colon
10	chr3:133291600-133295000	Active TSS	Right Atrium	heart
11	chr3:133291800-133293800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr3:133291800-133293800	Active TSS	Fetal Stomach	stomach
13	chr3:133291800-133293800	Active TSS	Thymus	Thymus
14	chr3:133291800-133293800	Active TSS	A549	lung
15	chr3:133291800-133294000	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr3:133291800-133294000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:133291800-133294000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:133291800-133294200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:133291800-133294200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:133291800-133294200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:133291800-133294200	Active TSS	Fetal Muscle Trunk	muscle
22	chr3:133291800-133294200	Active TSS	Ovary	ovary
23	chr3:133291800-133294200	Active TSS	Pancreas	Pancrea
24	chr3:133291800-133294800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:133291800-133295000	Active TSS	Left Ventricle	heart
26	chr3:133291800-133295400	Active TSS	Aorta	Aorta
27	chr3:133292000-133293800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:133292000-133293800	Active TSS	Primary monocytes fromperipheralblood	blood
29	chr3:133292000-133293800	Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr3:133292000-133293800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr3:133292000-133293800	Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr3:133292000-133293800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr3:133292000-133293800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:133292000-133293800	Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr3:133292000-133293800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:133292000-133293800	Active TSS	Brain Angular Gyrus	brain
37	chr3:133292000-133293800	Active TSS	Duodenum Mucosa	Duodenum
38	chr3:133292000-133293800	Active TSS	Fetal Lung	lung
39	chr3:133292000-133293800	Active TSS	Rectal Smooth Muscle	rectum
40	chr3:133292000-133293800	Active TSS	Stomach Smooth Muscle	stomach
41	chr3:133292000-133293800	Active TSS	HSMMtube	muscle
42	chr3:133292000-133293800	Active TSS	Monocytes-CD14+_RO01746	blood
43	chr3:133292000-133294000	Active TSS	H1 Cell Line	embryonic stem cell
44	chr3:133292000-133294000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:133292000-133294000	Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr3:133292000-133294000	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr3:133292000-133294000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:133292000-133294000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:133292000-133294000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:133292000-133294000	Active TSS	Primary T killer memory cells from peripheral blood	blood

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