Variant report

Variant	rs371561668
Chromosome Location	chr9:110034900-110034901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110034708..110043058-chr9:110043083..110050663,16	MCF-7	breast:
2	chr9:110022816..110024667-chr9:110034684..110036365,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3386089	chr9:110032581-110035729	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv2600042	chr9:110032754-110035987	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3412444	chr9:110032949-110035921	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv998754	chr9:110033009-110035508	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3500657	chr9:110033122-110036163	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv512113	chr9:110033250-110035492	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv2378700	chr9:110033251-110035526	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3500659	chr9:110033308-110035543	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3482661	chr9:110033335-110035533	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3500660	chr9:110033341-110035543	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3482662	chr9:110033348-110035551	Active TSS Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv3500658	chr9:110033356-110035542	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv3437998	chr9:110033356-110035904	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	esv3482664	chr9:110033372-110035599	Weak transcription Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv3500656	chr9:110033391-110035499	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv4904	chr9:110033416-110035780	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv3482665	chr9:110033443-110035461	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	esv3500661	chr9:110033443-110035464	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	nsv415896	chr9:110033455-110035457	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	esv3432528	chr9:110034865-110035501	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	esv3366008	chr9:110034885-110035471	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110029400-110035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:110032600-110036600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:110033000-110036000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:110033000-110036000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:110033200-110035600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:110033200-110035600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:110033200-110035600	Weak transcription	Placenta	Placenta
8	chr9:110033200-110035600	Weak transcription	NHLF	lung
9	chr9:110033200-110035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:110033200-110035800	Weak transcription	Hela-S3	cervix
11	chr9:110033200-110035800	Weak transcription	HSMMtube	muscle
12	chr9:110033200-110036000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:110033200-110036000	Weak transcription	GM12878-XiMat	blood
14	chr9:110033200-110036000	Weak transcription	Osteobl	bone
15	chr9:110033200-110036200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:110033200-110036200	Weak transcription	Pancreas	Pancrea
17	chr9:110033200-110036800	Weak transcription	Ovary	ovary
18	chr9:110033200-110036800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:110033400-110035600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:110033400-110035600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:110033400-110035600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:110033400-110035600	Weak transcription	Liver	Liver
23	chr9:110033400-110035600	Weak transcription	K562	blood
24	chr9:110033400-110035800	Weak transcription	A549	lung
25	chr9:110033400-110035800	Weak transcription	NHDF-Ad	bronchial
26	chr9:110033400-110036000	Weak transcription	HMEC	breast
27	chr9:110033400-110036000	Weak transcription	HSMM	muscle
28	chr9:110033400-110036200	Weak transcription	Adipose Nuclei	Adipose
29	chr9:110033400-110036200	Weak transcription	HepG2	liver

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