Variant report

Variant	rs371626474
Chromosome Location	chr12:119632510-119632511
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv899550	chr12:119581131-119654315	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv983367	chr12:119632173-119636306	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2075540	chr12:119632511-119632514	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119618800-119639600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:119619200-119639000	Weak transcription	Colonic Mucosa	Colon
3	chr12:119620000-119634000	Weak transcription	HUVEC	blood vessel
4	chr12:119620000-119636200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:119620000-119639200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr12:119620000-119639600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:119627000-119636400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:119627000-119641600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr12:119627200-119633600	Weak transcription	NH-A	brain
10	chr12:119627200-119634400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:119627200-119639000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr12:119627400-119635600	Weak transcription	Osteobl	bone
13	chr12:119627600-119632600	Strong transcription	Lung	lung
14	chr12:119627600-119641600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr12:119627800-119632800	Strong transcription	Adipose Nuclei	Adipose
16	chr12:119627800-119646600	Weak transcription	Gastric	stomach
17	chr12:119628200-119636200	Weak transcription	Brain Anterior Caudate	brain
18	chr12:119628400-119641200	Weak transcription	Fetal Heart	heart
19	chr12:119629200-119633400	Strong transcription	Fetal Muscle Leg	muscle
20	chr12:119629200-119633400	Strong transcription	Right Ventricle	heart
21	chr12:119629200-119634400	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr12:119629200-119634400	Strong transcription	Stomach Smooth Muscle	stomach
23	chr12:119629200-119634600	Strong transcription	Placenta	Placenta
24	chr12:119629200-119635200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr12:119629400-119633400	Strong transcription	Left Ventricle	heart
26	chr12:119629400-119633800	Strong transcription	Colon Smooth Muscle	Colon
27	chr12:119629400-119633800	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr12:119629600-119636400	Weak transcription	Right Atrium	heart
29	chr12:119630800-119634400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:119631000-119632800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr12:119631000-119633200	Strong transcription	Ovary	ovary
32	chr12:119631000-119633200	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr12:119631000-119633400	Strong transcription	Spleen	Spleen
34	chr12:119631000-119633800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr12:119631200-119639200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr12:119631400-119633800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:119631400-119633800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr12:119631400-119634800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr12:119631600-119633400	Strong transcription	Esophagus	oesophagus
40	chr12:119632000-119633400	Weak transcription	Pancreas	Pancrea
41	chr12:119632000-119633600	Strong transcription	Fetal Stomach	stomach
42	chr12:119632000-119642200	Weak transcription	Brain Substantia Nigra	brain
43	chr12:119632200-119634200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:119632200-119642200	Weak transcription	Psoas Muscle	Psoas
45	chr12:119632400-119632600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr12:119632400-119633800	Strong transcription	Aorta	Aorta
47	chr12:119632400-119634200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr12:119632400-119634800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr12:119632400-119635600	Weak transcription	HSMM	muscle
50	chr12:119632400-119636600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links