Variant report

Variant	rs371661612
Chromosome Location	chr15:74508605-74508606
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:74508421-74508650	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr15:74508425-74508651	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr15:74508409-74508609	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr15:74508424-74508650	MCF10A-Er-Src	breast:	n/a	chr15:74508475-74508485 chr15:74508475-74508485 chr15:74508475-74508485 chr15:74508476-74508484 chr15:74508475-74508485
5	FOS	chr15:74508304-74508654	MCF10A-Er-Src	breast:	n/a	chr15:74508475-74508485 chr15:74508475-74508485 chr15:74508475-74508485 chr15:74508476-74508484 chr15:74508475-74508485
6	FOS	chr15:74508338-74508651	MCF10A-Er-Src	breast:	n/a	chr15:74508475-74508485 chr15:74508475-74508485 chr15:74508475-74508485 chr15:74508476-74508484 chr15:74508475-74508485

Variant related genes	Relation type
ENSG00000259264	TF binding region
STRA6	TF binding region
CCDC33	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3351294	chr15:74508000-74509977	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74489200-74509600	Weak transcription	Gastric	stomach
2	chr15:74502200-74508800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:74504000-74508800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:74504000-74508800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr15:74504200-74508800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:74504200-74508800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr15:74504400-74508800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:74504400-74508800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:74504400-74508800	Enhancers	Fetal Thymus	thymus
10	chr15:74504400-74510400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:74506000-74508800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr15:74506400-74508800	Enhancers	NH-A	brain
13	chr15:74506600-74520400	Weak transcription	Left Ventricle	heart
14	chr15:74506800-74508800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:74506800-74513800	Weak transcription	Fetal Heart	heart
16	chr15:74507000-74508800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:74507000-74508800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:74507000-74508800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:74507000-74508800	Enhancers	HMEC	breast
20	chr15:74507000-74514000	Weak transcription	Right Atrium	heart
21	chr15:74507600-74511000	Weak transcription	Right Ventricle	heart
22	chr15:74507600-74512200	Weak transcription	Fetal Brain Male	brain
23	chr15:74507800-74512400	Weak transcription	Brain Germinal Matrix	brain
24	chr15:74508000-74509600	Enhancers	A549	lung
25	chr15:74508000-74512600	Weak transcription	Fetal Kidney	kidney
26	chr15:74508000-74512800	Weak transcription	Fetal Stomach	stomach
27	chr15:74508200-74508800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
28	chr15:74508200-74512600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:74508400-74508800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
30	chr15:74508400-74508800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
31	chr15:74508400-74508800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
32	chr15:74508400-74508800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
33	chr15:74508400-74509000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
34	chr15:74508400-74509200	Enhancers	Hela-S3	cervix
35	chr15:74508400-74512200	Weak transcription	Fetal Brain Female	brain
36	chr15:74508400-74512800	Weak transcription	Fetal Lung	lung
37	chr15:74508600-74508800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:74508600-74508800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
39	chr15:74508600-74508800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:74508600-74512600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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