Variant report

Variant	rs371756816
Chromosome Location	chr3:69171822-69171823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:69171822-69171872	GM12892	blood:	n/a
2	chr3:69171822-69171872	HRE	kidney:	n/a
3	chr3:69171822-69171872	MCF-7	breast:	n/a
4	chr3:69171822-69171872	LNCaP	prostate:	n/a
5	chr3:69171822-69171872	MCF10A-Er-Src	breast:	n/a
6	chr3:69171822-69171872	AG09309	skin:	n/a
7	chr3:69171822-69171872	A549	lung:	n/a
8	chr3:69171822-69171872	NB4	blood:	n/a
9	chr3:69171822-69171872	HCM	heart:	n/a
10	chr3:69171822-69171872	NH-A	brain:	n/a
11	chr3:69171822-69171872	AG04449	skin:	fetal
12	chr3:69171822-69171872	HPAEpiC	pulmonary alveolar:	n/a
13	chr3:69171822-69171872	Hepatocyte	liver:	n/a
14	chr3:69171822-69171872	H1-hESC	embryonic stem cell:	embryo
15	chr3:69171822-69171872	U87	brain:	n/a
16	chr3:69171822-69171872	GM12891	blood:	n/a
17	chr3:69171822-69171872	HMEC	breast:	n/a
18	chr3:69171822-69171872	RPTEC	kidney:	n/a
19	chr3:69171822-69171872	PFSK-1	brain:	n/a
20	chr3:69171822-69171872	HCT-116	colon:	n/a
21	chr3:69171822-69171872	AG04450	lung:	fetal
22	chr3:69171822-69171872	SAEC	small airway:	n/a
23	chr3:69171822-69171872	IMR90	lung:	fetal
24	chr3:69171822-69171872	GM19239	blood:	n/a
25	chr3:69171822-69171872	BE2_C	brain:	n/a
26	chr3:69171822-69171872	HRCEpiC	kidney:	n/a
27	chr3:69171822-69171872	HRPEpiC	eye:	n/a
28	chr3:69171822-69171872	HNPCEpiC	eye:	n/a
29	chr3:69171822-69171872	ECC-1	luminal epithelium:	n/a
30	chr3:69171822-69171872	HIPEpiC	eye:	n/a
31	chr3:69171822-69171872	GM12878	blood:	n/a
32	chr3:69171822-69171872	Caco-2	colon:	n/a
33	chr3:69171822-69171872	HepG2	liver:	n/a
34	chr3:69171822-69171872	K562	blood:	n/a
35	chr3:69171822-69171872	ovcar-3	ovarian:	n/a
36	chr3:69171822-69171872	HEEpiC	esophagus:	n/a
37	chr3:69171822-69171872	Hela-S3	cervix:	n/a
38	chr3:69171822-69171872	HCPEpiC	choroid plexus:	n/a
39	chr3:69171822-69171872	NHDF-neo	bronchial:	n/a
40	chr3:69171822-69171872	GM06990	blood:	n/a
41	chr3:69171822-69171872	CMK	blood:	n/a
42	chr3:69171822-69171872	HUVEC	blood vessel:	n/a
43	chr3:69171822-69171872	HL-60	blood:	n/a
44	chr3:69171822-69171872	BJ	skin:	n/a
45	chr3:69171822-69171872	AG09319	gingival:	n/a
46	chr3:69171822-69171872	AG10803	skin:	n/a
47	chr3:69171822-69171872	HCF	heart:	n/a
48	chr3:69171822-69171872	NT2-D1	testis:	n/a
49	chr3:69171822-69171872	Jurkat	blood:	n/a
50	chr3:69171822-69171872	SK-N-MC	brain:	n/a

No data

Variant related genes	Relation type
LMOD3	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2762334	chr3:69157085-69173375	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69160600-69172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:69169000-69172000	Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr3:69169000-69172000	Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr3:69169800-69172200	Active TSS	Left Ventricle	heart
5	chr3:69169800-69172200	Active TSS	Psoas Muscle	Psoas
6	chr3:69170800-69172200	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr3:69171200-69172200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:69171200-69172200	Enhancers	Brain Substantia Nigra	brain
9	chr3:69171400-69172400	Enhancers	Hela-S3	cervix
10	chr3:69171600-69172000	Enhancers	Fetal Lung	lung
11	chr3:69171600-69172000	Enhancers	HUVEC	blood vessel
12	chr3:69171600-69172600	Enhancers	HSMM	muscle
13	chr3:69171600-69173000	Enhancers	Fetal Heart	heart
14	chr3:69171800-69172000	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr3:69171800-69172200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:69171800-69172200	Flanking Active TSS	HSMMtube	muscle
17	chr3:69171800-69172400	Enhancers	Fetal Muscle Leg	muscle

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