Variant report

Variant	rs371771170
Chromosome Location	chr15:73659951-73659952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73659851..73663146-chr15:73925069..73927598,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3388771	chr15:73659224-73662947	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv3403418	chr15:73659924-73662772	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73658600-73660000	Active TSS	Fetal Heart	heart
2	chr15:73658600-73661800	Active TSS	Right Atrium	heart
3	chr15:73658800-73660000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
4	chr15:73658800-73660000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:73659000-73660000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr15:73659000-73660000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:73659000-73660600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:73659200-73660000	Bivalent Enhancer	Placenta	Placenta
9	chr15:73659200-73660600	Bivalent Enhancer	Lung	lung
10	chr15:73659200-73661400	Active TSS	Left Ventricle	heart
11	chr15:73659200-73661600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr15:73659200-73661800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
13	chr15:73659200-73662000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:73659400-73660000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:73659400-73660000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
16	chr15:73659400-73660000	Bivalent Enhancer	Fetal Intestine Large	intestine
17	chr15:73659400-73660000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr15:73659400-73661200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
19	chr15:73659400-73661400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
20	chr15:73659400-73661800	Bivalent Enhancer	Spleen	Spleen
21	chr15:73659400-73662000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:73659400-73662000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr15:73659400-73662200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr15:73659400-73662200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr15:73659600-73660000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
26	chr15:73659600-73660000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:73659600-73660000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:73659600-73660000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:73659600-73660000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
30	chr15:73659600-73660000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
31	chr15:73659600-73660200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
32	chr15:73659600-73660200	Bivalent Enhancer	Brain Hippocampus Middle	brain
33	chr15:73659600-73661400	Flanking Active TSS	Pancreas	Pancrea
34	chr15:73659600-73661800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:73659600-73662200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
36	chr15:73659600-73662200	Bivalent/Poised TSS	Fetal Brain Female	brain
37	chr15:73659800-73660000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
38	chr15:73659800-73660000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:73659800-73660000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
40	chr15:73659800-73660000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
41	chr15:73659800-73660000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
42	chr15:73659800-73660000	Bivalent Enhancer	Fetal Stomach	stomach
43	chr15:73659800-73660000	Active TSS	Right Ventricle	heart
44	chr15:73659800-73660000	Bivalent Enhancer	Stomach Mucosa	stomach
45	chr15:73659800-73660000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
46	chr15:73659800-73660200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:73659800-73660200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:73659800-73660200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:73659800-73660200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:73659800-73660200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum

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