Variant report

Variant	rs371895906
Chromosome Location	chr18:43557216-43557217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2277	chr18:43543715-43588579	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv817792	chr18:43556952-43561238	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43548000-43567000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:43548200-43562800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:43554200-43567200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr18:43554400-43558200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr18:43554400-43566200	Weak transcription	Liver	Liver
6	chr18:43554600-43557400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr18:43554600-43558800	Weak transcription	Primary B cells from cord blood	blood
8	chr18:43554600-43560000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr18:43554600-43560000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr18:43554600-43560000	Weak transcription	Fetal Heart	heart
11	chr18:43554600-43560000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr18:43554600-43560000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr18:43554600-43562600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr18:43554600-43563000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr18:43554600-43566200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr18:43554600-43566800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr18:43554600-43567400	Weak transcription	Adipose Nuclei	Adipose
18	chr18:43554600-43567800	Weak transcription	Primary T cells from cord blood	blood
19	chr18:43554600-43567800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr18:43554600-43568000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr18:43554600-43568800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr18:43554600-43571400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr18:43554800-43558200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr18:43555000-43562600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr18:43555800-43557400	Enhancers	K562	blood
26	chr18:43556600-43557400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr18:43557000-43557400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr18:43557200-43557400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr18:43557200-43557400	Enhancers	Left Ventricle	heart
30	chr18:43557200-43557600	Enhancers	HUVEC	blood vessel
31	chr18:43557200-43557800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr18:43557200-43558800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr18:43557200-43558800	Enhancers	Pancreas	Pancrea
34	chr18:43557200-43567200	Weak transcription	Osteobl	bone
35	chr18:43557200-43573400	Weak transcription	NHLF	lung

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