Variant report

Variant	rs371908183
Chromosome Location	chr13:38925070-38925071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38921186..38924004-chr13:38924043..38925621,2	MCF-7	breast:
2	chr13:38924316..38926531-chr13:38938318..38940718,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120686	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv561512	chr13:38881318-38930893	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900005	chr13:38881318-38932949	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv976234	chr13:38924727-38933604	Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38922400-38925200	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr13:38922600-38925200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:38922600-38925200	Active TSS	HSMMtube	muscle
4	chr13:38922600-38926000	Active TSS	Right Atrium	heart
5	chr13:38922800-38925200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr13:38922800-38925200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:38922800-38925200	Active TSS	NHLF	lung
8	chr13:38922800-38926200	Active TSS	Right Ventricle	heart
9	chr13:38923000-38925200	Active TSS	Colonic Mucosa	Colon
10	chr13:38923000-38925200	Active TSS	Fetal Muscle Trunk	muscle
11	chr13:38923000-38925200	Active TSS	Ovary	ovary
12	chr13:38923000-38925400	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr13:38923000-38925400	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr13:38923000-38925400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:38923000-38925400	Active TSS	Left Ventricle	heart
16	chr13:38923000-38925400	Active TSS	Pancreas	Pancrea
17	chr13:38923000-38925600	Active TSS	A549	lung
18	chr13:38923000-38926000	Active TSS	Psoas Muscle	Psoas
19	chr13:38923200-38925200	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr13:38924000-38925200	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr13:38924000-38925200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr13:38924200-38925200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr13:38924200-38925400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr13:38924400-38925200	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr13:38924400-38925200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr13:38924400-38925200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr13:38924400-38925200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr13:38924400-38925200	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr13:38924400-38938800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr13:38924600-38925200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr13:38924600-38925200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr13:38924600-38925200	Flanking Active TSS	Liver	Liver
33	chr13:38924600-38925200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
34	chr13:38924600-38925200	Flanking Active TSS	Fetal Heart	heart
35	chr13:38924600-38925200	Flanking Active TSS	Fetal Lung	lung
36	chr13:38924600-38925200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr13:38924600-38925200	Flanking Active TSS	Rectal Smooth Muscle	rectum
38	chr13:38924600-38925200	Weak transcription	Spleen	Spleen
39	chr13:38924600-38925200	Flanking Active TSS	HUVEC	blood vessel
40	chr13:38924600-38925400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:38924600-38925400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr13:38924600-38925400	Flanking Active TSS	Fetal Brain Male	brain
43	chr13:38924600-38925400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr13:38924600-38925600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr13:38924600-38925600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr13:38924600-38925600	Flanking Active TSS	Dnd41	blood
47	chr13:38924600-38925800	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr13:38924600-38925800	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr13:38924600-38926000	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr13:38924600-38926000	Flanking Active TSS	Colon Smooth Muscle	Colon

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