Variant report

Variant	rs371930917
Chromosome Location	chr5:73981391-73981392
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:73979598..73982392-chr5:73983812..73990818,9	MCF-7	breast:
2	chr5:73969331..73972056-chr5:73981357..73983781,2	MCF-7	breast:
3	chr5:73979909..73982593-chr5:73987219..73990536,5	MCF-7	breast:
4	chr5:73981038..73983852-chr5:73999852..74002635,2	MCF-7	breast:
5	chr5:72857771..72859719-chr5:73979974..73981658,2	K562	blood:
6	chr5:73980885..73983030-chr5:74062980..74064496,2	MCF-7	breast:
7	chr5:73980002..73981869-chr5:74633426..74635131,2	K562	blood:
8	chr19:39926302..39926892-chr5:73980939..73981515,2	Hela-S3	cervix:
9	chr5:73981324..73983563-chr5:74077397..74079724,2	K562	blood:
10	chr5:73980953..73983731-chr5:74012002..74014571,3	MCF-7	breast:
11	chr5:73978938..73982006-chr5:74061565..74064417,3	K562	blood:
12	chr5:73979743..73983565-chr5:73984545..73990071,12	K562	blood:
13	chr5:73979647..73982006-chr5:74061742..74064417,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164347	Chromatin interaction
ENSG00000113161	Chromatin interaction
ENSG00000049860	Chromatin interaction
ENSG00000164346	Chromatin interaction
ENSG00000196235	Chromatin interaction
ENSG00000164331	Chromatin interaction
ENSG00000105193	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13844	chr5:73979961-73993853	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv598652	chr5:73980182-73992881	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	nsv934214	chr5:73981349-73993050	Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73980000-73981600	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr5:73980200-73981600	Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr5:73980400-73981600	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr5:73980400-73981600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:73980400-73981600	Active TSS	A549	lung
6	chr5:73980400-73981800	Active TSS	Primary T killer memory cells from peripheral blood	blood
7	chr5:73980600-73981400	Active TSS	H1 Cell Line	embryonic stem cell
8	chr5:73980600-73981400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:73980600-73981400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:73980600-73981400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:73980600-73981400	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr5:73980600-73981400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:73980600-73981400	Active TSS	Primary monocytes fromperipheralblood	blood
14	chr5:73980600-73981400	Active TSS	Primary B cells from cord blood	blood
15	chr5:73980600-73981400	Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr5:73980600-73981400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:73980600-73981400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:73980600-73981400	Active TSS	Muscle Satellite Cultured Cells	--
19	chr5:73980600-73981400	Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr5:73980600-73981400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:73980600-73981400	Active TSS	Adipose Nuclei	Adipose
22	chr5:73980600-73981400	Active TSS	Liver	Liver
23	chr5:73980600-73981400	Active TSS	Brain Germinal Matrix	brain
24	chr5:73980600-73981400	Active TSS	Colonic Mucosa	Colon
25	chr5:73980600-73981400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr5:73980600-73981400	Active TSS	Fetal Brain Female	brain
27	chr5:73980600-73981400	Active TSS	Fetal Stomach	stomach
28	chr5:73980600-73981400	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr5:73980600-73981400	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr5:73980600-73981600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:73980600-73981600	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr5:73980600-73981600	Active TSS	Primary T cells from cord blood	blood
33	chr5:73980600-73981600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr5:73980600-73981600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr5:73980600-73981600	Active TSS	Brain Anterior Caudate	brain
36	chr5:73980600-73981600	Active TSS	Brain Cingulate Gyrus	brain
37	chr5:73980600-73981600	Active TSS	Duodenum Mucosa	Duodenum
38	chr5:73980600-73981600	Active TSS	Left Ventricle	heart
39	chr5:73980600-73981600	Active TSS	Pancreas	Pancrea
40	chr5:73980600-73981600	Active TSS	Psoas Muscle	Psoas
41	chr5:73980600-73981600	Active TSS	Hela-S3	cervix
42	chr5:73980600-73981600	Active TSS	HSMM	muscle
43	chr5:73980600-73981600	Active TSS	K562	blood
44	chr5:73980600-73981600	Active TSS	NHEK	skin
45	chr5:73980600-73981600	Active TSS	Osteobl	bone
46	chr5:73980600-73981800	Active TSS	H9 Cell Line	embryonic stem cell
47	chr5:73980600-73981800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr5:73980600-73981800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr5:73980600-73981800	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr5:73980600-73981800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links