Variant report

Variant	rs372131451
Chromosome Location	chr5:106927404-106927405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106914216..106916170-chr5:106926052..106928145,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv3398438	chr5:106926753-106928901	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3436609	chr5:106927203-106928401	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106913600-106928800	Weak transcription	Right Ventricle	heart
2	chr5:106914800-106928200	Weak transcription	Left Ventricle	heart
3	chr5:106915200-106929800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:106915600-106928200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:106917000-106929200	Weak transcription	HMEC	breast
6	chr5:106917400-106928000	Weak transcription	HSMMtube	muscle
7	chr5:106917600-106928200	Weak transcription	A549	lung
8	chr5:106917800-106928600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:106919800-106928200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:106920800-106928400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:106924000-106928000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:106924800-106928400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:106925000-106928200	Weak transcription	Fetal Muscle Leg	muscle
14	chr5:106925000-106928600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:106926000-106928200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:106926000-106928600	Weak transcription	Fetal Stomach	stomach
17	chr5:106926000-106931400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:106926000-106941000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:106926200-106928400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:106926400-106928800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:106926600-106928200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr5:106926800-106930000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:106927200-106928000	Weak transcription	GM12878-XiMat	blood
24	chr5:106927200-106928200	Weak transcription	Fetal Heart	heart
25	chr5:106927200-106930000	Weak transcription	Esophagus	oesophagus

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