Variant report

Variant	rs372145677
Chromosome Location	chr2:96516206-96516207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3416818	chr2:96072529-96680708	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv874660	chr2:96091132-96669134	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv516044	chr2:96150959-96683378	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1003371	chr2:96326106-96684876	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv874662	chr2:96334397-96578621	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv874664	chr2:96370571-96534132	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv874665	chr2:96370571-96596515	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv874666	chr2:96370571-96691125	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1004482	chr2:96408987-96596717	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv834303	chr2:96432935-96551704	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv428054	chr2:96438238-96627125	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv961832	chr2:96453677-96671971	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv874667	chr2:96465201-96596515	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv874668	chr2:96465201-96600569	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv1826589	chr2:96468292-96583910	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv1826305	chr2:96468492-96583710	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
17	esv1848259	chr2:96477989-96583252	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv834304	chr2:96493545-96667472	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	esv20639	chr2:96515590-96527840	Strong transcription ZNF genes & repeats Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv821038	chr2:96515590-96527840	Strong transcription Weak transcription ZNF genes & repeats Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:96494200-96517600	Weak transcription	HUVEC	blood vessel
2	chr2:96495000-96523200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr2:96495000-96532800	Weak transcription	HSMM	muscle
4	chr2:96496600-96521200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr2:96497400-96521200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:96500200-96522000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:96500600-96553400	Weak transcription	Brain Anterior Caudate	brain
8	chr2:96500800-96521000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:96500800-96521600	Weak transcription	Aorta	Aorta
10	chr2:96501000-96519400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr2:96501000-96526400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:96501600-96526400	Weak transcription	Gastric	stomach
13	chr2:96501800-96524200	Weak transcription	K562	blood
14	chr2:96502600-96523000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:96502600-96547800	Weak transcription	Fetal Thymus	thymus
16	chr2:96502600-96561400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:96502800-96517400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr2:96502800-96518000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:96502800-96521200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:96502800-96522200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr2:96502800-96524800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr2:96502800-96526400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr2:96502800-96527400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:96502800-96533800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr2:96502800-96535600	Weak transcription	Brain Germinal Matrix	brain
26	chr2:96502800-96548400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:96502800-96548600	Weak transcription	Thymus	Thymus
28	chr2:96502800-96551400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr2:96502800-96555200	Weak transcription	Ovary	ovary
30	chr2:96502800-96585000	Weak transcription	Left Ventricle	heart
31	chr2:96502800-96616600	Weak transcription	Fetal Stomach	stomach
32	chr2:96503000-96519800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr2:96503000-96521400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr2:96503000-96563600	Weak transcription	Brain Hippocampus Middle	brain
35	chr2:96503200-96544400	Weak transcription	Primary T cells from cord blood	blood
36	chr2:96503200-96548800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr2:96505200-96521000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr2:96506200-96549400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr2:96506600-96562000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr2:96514000-96526400	Weak transcription	Psoas Muscle	Psoas
41	chr2:96515200-96516800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:96515400-96517400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:96515600-96516400	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr2:96515600-96516800	Strong transcription	Adipose Nuclei	Adipose
45	chr2:96515600-96517800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr2:96515600-96518800	Strong transcription	Dnd41	blood
47	chr2:96515800-96517800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr2:96516000-96517600	Weak transcription	Fetal Lung	lung
49	chr2:96516000-96534600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr2:96516200-96517600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links