Variant report

Variant	rs372237956
Chromosome Location	chr15:31683617-31683618
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr15:31683549-31685024	IMR90	lung:	n/a	chr15:31683612-31683622 chr15:31684495-31684504

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31682078..31683956-chr15:31730554..31733122,2	K562	blood:
2	chr15:31616992..31619470-chr15:31682984..31685911,2	K562	blood:

Variant related genes	Relation type
KLF13	TF binding region
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	esv3423388	chr15:31682185-31685233	Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv3341673	chr15:31682510-31685058	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31670800-31683800	Weak transcription	Small Intestine	intestine
2	chr15:31673600-31684000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:31674200-31684000	Weak transcription	Colonic Mucosa	Colon
4	chr15:31674600-31683800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr15:31674600-31684000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:31675000-31684000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:31675200-31684000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:31675800-31683800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:31675800-31683800	Weak transcription	Right Atrium	heart
10	chr15:31675800-31684000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:31677000-31684000	Weak transcription	Gastric	stomach
12	chr15:31680400-31683800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:31680400-31683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:31680400-31684000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:31680400-31684000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:31680400-31684000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr15:31680400-31684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:31680400-31684000	Weak transcription	Brain Anterior Caudate	brain
19	chr15:31680400-31684000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:31680400-31684000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:31680400-31684000	Weak transcription	Brain Substantia Nigra	brain
22	chr15:31680400-31684000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:31680400-31684000	Weak transcription	Esophagus	oesophagus
24	chr15:31680400-31684200	Weak transcription	Spleen	Spleen
25	chr15:31680600-31683800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:31680600-31684000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:31680600-31684000	Weak transcription	Liver	Liver
28	chr15:31680600-31684000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:31680600-31684000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr15:31680600-31684000	Weak transcription	GM12878-XiMat	blood
31	chr15:31680600-31684000	Weak transcription	Hela-S3	cervix
32	chr15:31680800-31684000	Weak transcription	Primary T cells from cord blood	blood
33	chr15:31680800-31684000	Weak transcription	Pancreas	Pancrea
34	chr15:31680800-31684000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:31680800-31684000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr15:31680800-31684000	Weak transcription	HMEC	breast
37	chr15:31680800-31684000	Weak transcription	Osteobl	bone
38	chr15:31680800-31684200	Weak transcription	Dnd41	blood
39	chr15:31681200-31684000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:31682000-31683800	Weak transcription	Psoas Muscle	Psoas
41	chr15:31682200-31683800	Weak transcription	Left Ventricle	heart
42	chr15:31682400-31683800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:31682800-31683800	Weak transcription	Primary B cells from cord blood	blood
44	chr15:31682800-31684000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:31682800-31684000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:31683000-31683800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:31683000-31683800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:31683000-31684000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:31683200-31683800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:31683200-31683800	Weak transcription	Aorta	Aorta

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