Variant report

Variant	rs372242729
Chromosome Location	chr7:65843415-65843416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv970513	chr7:65842694-65860742	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv981506	chr7:65842694-65876873	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv32937	chr7:65842976-65844524	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65805200-65843600	Weak transcription	Aorta	Aorta
2	chr7:65814000-65843800	Weak transcription	Brain Angular Gyrus	brain
3	chr7:65817600-65844200	Weak transcription	Right Atrium	heart
4	chr7:65817600-65844600	Weak transcription	Fetal Brain Female	brain
5	chr7:65819200-65844200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:65822000-65843800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:65823400-65843600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:65824800-65843600	Weak transcription	Esophagus	oesophagus
9	chr7:65825000-65844400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:65825200-65844200	Weak transcription	NHLF	lung
11	chr7:65827000-65843800	Weak transcription	NHEK	skin
12	chr7:65831800-65844200	Weak transcription	NHDF-Ad	bronchial
13	chr7:65832000-65844200	Weak transcription	Fetal Lung	lung
14	chr7:65836400-65843800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:65836600-65846400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:65838800-65844600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:65839000-65844000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:65839000-65844000	Weak transcription	Placenta	Placenta
19	chr7:65839000-65844800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:65839200-65843800	Weak transcription	Adipose Nuclei	Adipose
21	chr7:65839400-65843800	Weak transcription	Ovary	ovary
22	chr7:65839400-65844400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:65839400-65844600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr7:65839600-65843800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:65839800-65843600	Strong transcription	Fetal Stomach	stomach
26	chr7:65839800-65843600	Weak transcription	HMEC	breast
27	chr7:65839800-65843800	Weak transcription	Primary T cells from cord blood	blood
28	chr7:65839800-65844000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:65839800-65844200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr7:65839800-65844200	Weak transcription	Brain Anterior Caudate	brain
31	chr7:65839800-65845200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr7:65840000-65843600	Weak transcription	Colonic Mucosa	Colon
33	chr7:65840000-65878400	Weak transcription	Psoas Muscle	Psoas
34	chr7:65840200-65844800	Strong transcription	Fetal Muscle Leg	muscle
35	chr7:65840400-65844400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:65840400-65844400	Weak transcription	HepG2	liver
37	chr7:65840400-65873400	Weak transcription	K562	blood
38	chr7:65840600-65858400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:65841000-65843800	Weak transcription	Brain Substantia Nigra	brain
40	chr7:65841200-65843800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr7:65841200-65844000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr7:65841200-65844200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr7:65841200-65844400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:65841200-65847600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr7:65841400-65844000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:65841400-65844000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr7:65841400-65844200	Weak transcription	Left Ventricle	heart
48	chr7:65841400-65875400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:65841600-65843800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:65841600-65845000	Strong transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links