Variant report

Variant	rs372242731
Chromosome Location	chr5:178334623-178334624
allele	-/ATAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3470830	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3470831	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
3	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:178333000-178335800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:178333400-178335600	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:178333400-178335600	Weak transcription	Brain Substantia Nigra	brain
7	chr5:178333400-178335600	Weak transcription	Left Ventricle	heart
8	chr5:178333400-178335800	Weak transcription	Gastric	stomach
9	chr5:178333400-178336000	Weak transcription	Brain Angular Gyrus	brain
10	chr5:178333400-178336200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr5:178333400-178336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:178333400-178336200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:178334200-178334800	Strong transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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