Variant report

Variant	rs372243829
Chromosome Location	chr21:16647176-16647177
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1056659	chr21:16646531-16709391	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16636200-16653200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr21:16644800-16648000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr21:16644800-16648000	Weak transcription	Placenta	Placenta
4	chr21:16645200-16648200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr21:16645400-16647200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr21:16645400-16648200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr21:16645600-16647800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr21:16645600-16647800	Weak transcription	HSMM	muscle
9	chr21:16645600-16648000	Weak transcription	Adipose Nuclei	Adipose
10	chr21:16645600-16648000	Weak transcription	HSMMtube	muscle
11	chr21:16646600-16649000	Enhancers	Primary hematopoietic stem cells	blood
12	chr21:16647000-16647200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr21:16647000-16647600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr21:16647000-16648200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr21:16647000-16649000	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links