Variant report

Variant	rs372261971
Chromosome Location	chr6:33480247-33480248
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33422288..33424743-chr6:33478570..33480571,2	MCF-7	breast:
2	chr6:33393869..33396201-chr6:33479107..33481448,2	MCF-7	breast:
3	chr6:33479121..33484420-chr6:33487848..33490096,5	K562	blood:

Variant related genes	Relation type
ENSG00000213588	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv521506	chr6:33468151-33480738	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3392894	chr6:33479074-33482772	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33474400-33481200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:33477200-33480400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:33477800-33480600	Weak transcription	GM12878-XiMat	blood
4	chr6:33479400-33480600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:33479800-33480400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr6:33479800-33480400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:33479800-33480600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:33479800-33480600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:33479800-33480600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:33479800-33480600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr6:33479800-33480600	Enhancers	Placenta	Placenta
12	chr6:33479800-33481000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:33479800-33481200	Enhancers	Fetal Thymus	thymus
14	chr6:33480000-33480400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:33480000-33480400	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:33480000-33480400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:33480000-33480400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:33480000-33480400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:33480000-33480400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:33480000-33480600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:33480000-33480600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:33480000-33480600	Enhancers	Primary B cells from cord blood	blood
23	chr6:33480000-33480600	Enhancers	Primary T cells from cord blood	blood
24	chr6:33480000-33480600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:33480000-33480600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:33480000-33480600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:33480000-33480600	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:33480000-33480600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:33480000-33480600	Enhancers	Pancreas	Pancrea
30	chr6:33480000-33480800	Enhancers	Thymus	Thymus
31	chr6:33480000-33481000	Enhancers	Spleen	Spleen
32	chr6:33480000-33481200	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr6:33480200-33480400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr6:33480200-33480400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
35	chr6:33480200-33480600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:33480200-33480600	Bivalent Enhancer	K562	blood
37	chr6:33480200-33481400	Strong transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links