Variant report

Variant	rs372320089
Chromosome Location	chr15:83480613-83480614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83480184..83483063-chr15:83673551..83675141,2	K562	blood:
2	chr15:83346623..83348757-chr15:83479507..83481301,2	K562	blood:
3	chr15:83475882..83480852-chr15:83678880..83683242,6	MCF-7	breast:
4	chr15:83477828..83481866-chr15:83483118..83489176,7	K562	blood:
5	chr15:83347885..83349520-chr15:83478710..83480628,2	MCF-7	breast:
6	chr15:83313427..83317808-chr15:83477553..83483000,6	K562	blood:
7	chr15:83417832..83422548-chr15:83476028..83480956,9	K562	blood:
8	chr15:83479049..83481749-chr15:83503841..83505564,2	K562	blood:
9	chr15:83333197..83334998-chr15:83479229..83480988,2	MCF-7	breast:
10	chr15:83417361..83424147-chr15:83476165..83481050,26	MCF-7	breast:
11	chr15:83348193..83350766-chr15:83477443..83480779,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000250988	Chromatin interaction
ENSG00000260608	Chromatin interaction
ENSG00000214575	Chromatin interaction
ENSG00000259462	Chromatin interaction
ENSG00000156232	Chromatin interaction
ENSG00000252690	Chromatin interaction
ENSG00000103723	Chromatin interaction
ENSG00000169609	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469557	chr15:83417763-83560629	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482340	chr15:83417763-83560629	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv471687	chr15:83417764-83560629	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	esv3371602	chr15:83476798-83481096	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
5	nsv977747	chr15:83479370-83496161	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	nsv9288	chr15:83479484-83496828	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83477400-83481000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:83477600-83480800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:83477800-83481000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:83478000-83480800	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr15:83478000-83480800	Active TSS	NH-A	brain
6	chr15:83478000-83481000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:83478000-83481400	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr15:83478200-83480800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:83478200-83480800	Active TSS	Primary T cells fromperipheralblood	blood
10	chr15:83478200-83480800	Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr15:83478200-83480800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:83478200-83480800	Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr15:83478200-83480800	Active TSS	Hela-S3	cervix
14	chr15:83478200-83480800	Active TSS	HMEC	breast
15	chr15:83478200-83480800	Active TSS	K562	blood
16	chr15:83478200-83480800	Active TSS	NHEK	skin
17	chr15:83478200-83481000	Active TSS	HUVEC	blood vessel
18	chr15:83478200-83481000	Active TSS	NHLF	lung
19	chr15:83478200-83481800	Active TSS	GM12878-XiMat	blood
20	chr15:83478400-83481000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:83479200-83481200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:83479400-83480800	Active TSS	Right Atrium	heart
23	chr15:83479400-83481000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:83479400-83481200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:83479400-83481800	Weak transcription	Spleen	Spleen
26	chr15:83479400-83482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:83479600-83480800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:83479600-83481000	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr15:83479600-83485800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:83479600-83504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:83479800-83480800	Weak transcription	Small Intestine	intestine
32	chr15:83479800-83483200	Weak transcription	Gastric	stomach
33	chr15:83479800-83504000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr15:83480000-83480800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:83480000-83480800	Weak transcription	Left Ventricle	heart
36	chr15:83480000-83480800	Weak transcription	Pancreas	Pancrea
37	chr15:83480000-83480800	Enhancers	Placenta Amnion	Placenta Amnion
38	chr15:83480000-83480800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr15:83480000-83481000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr15:83480000-83481000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:83480000-83482000	Weak transcription	Lung	lung
42	chr15:83480000-83482800	Weak transcription	Fetal Brain Female	brain
43	chr15:83480000-83485600	Weak transcription	Esophagus	oesophagus
44	chr15:83480000-83497000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:83480000-83501600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr15:83480200-83480800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr15:83480200-83481000	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr15:83480200-83481000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:83480200-83481000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr15:83480200-83481000	Enhancers	Brain Inferior Temporal Lobe	brain

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