Variant report

Variant	rs372344230
Chromosome Location	chr7:104758499-104758500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:104758047-104759648	MCF-7	breast:	n/a	n/a
2	POLR2A	chr7:104758064-104758681	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr7:104758258-104758771	U87	brain:	n/a	n/a
4	POLR2A	chr7:104756442-104759276	GM12891	blood:	n/a	n/a
5	POLR2A	chr7:104757864-104759205	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr7:104757998-104758696	GM12878	blood:	n/a	n/a
7	POLR2A	chr7:104750548-104759120	K562	blood:	n/a	n/a
8	POLR2A	chr7:104758375-104758844	GM12878	blood:	n/a	n/a
9	POLR2A	chr7:104758456-104758729	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr7:104758366-104758760	H1-neurons	neurons:	n/a	n/a
11	POLR2A	chr7:104758004-104759016	SK-N-MC	brain:	n/a	n/a
12	POLR2A	chr7:104757084-104759770	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104757007..104759673-chr7:105027481..105029991,2	MCF-7	breast:
2	chr7:104758250..104759925-chr7:105171993..105174192,2	MCF-7	breast:

Variant related genes	Relation type
SRPK2	TF binding region
ENSG00000135249	Chromatin interaction
ENSG00000135250	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104678000-104812200	Strong transcription	Dnd41	blood
2	chr7:104681200-104760400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:104685600-104759000	Strong transcription	Primary B cells from peripheral blood	blood
4	chr7:104701400-104758800	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr7:104702800-104758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:104703600-104759000	Strong transcription	Fetal Intestine Large	intestine
7	chr7:104706000-104760200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:104712400-104758800	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:104722200-104759400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:104727800-104759200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:104727800-104759800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:104727800-104760400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr7:104728000-104760200	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr7:104737800-104758800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:104738800-104760200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:104739000-104759200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr7:104740200-104759000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:104740200-104759400	Strong transcription	Primary B cells from cord blood	blood
19	chr7:104740400-104759200	Strong transcription	Primary T cells from cord blood	blood
20	chr7:104740400-104787400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:104740800-104760200	Strong transcription	HMEC	breast
22	chr7:104741600-104758600	Strong transcription	Placenta	Placenta
23	chr7:104742200-104759800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:104742400-104760200	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:104743800-104758600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:104743800-104758600	Strong transcription	GM12878-XiMat	blood
27	chr7:104745200-104758600	Strong transcription	Primary hematopoietic stem cells	blood
28	chr7:104750200-104777000	Weak transcription	Right Atrium	heart
29	chr7:104752800-104759400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr7:104752800-104763200	Weak transcription	Fetal Heart	heart
31	chr7:104752800-104807400	Weak transcription	Fetal Brain Male	brain
32	chr7:104753200-104758800	Strong transcription	Stomach Smooth Muscle	stomach
33	chr7:104753200-104760800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:104753600-104759000	Strong transcription	Brain Anterior Caudate	brain
35	chr7:104753600-104759600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:104753600-104759800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:104753600-104768000	Weak transcription	Psoas Muscle	Psoas
38	chr7:104753800-104759000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:104753800-104759000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:104753800-104759000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:104753800-104759200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:104753800-104759200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr7:104753800-104759200	Weak transcription	Ovary	ovary
44	chr7:104753800-104762000	Weak transcription	NHEK	skin
45	chr7:104753800-104763800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:104753800-104764400	Weak transcription	Esophagus	oesophagus
47	chr7:104753800-104764400	Weak transcription	Fetal Stomach	stomach
48	chr7:104753800-104764400	Weak transcription	Pancreas	Pancrea
49	chr7:104753800-104764400	Weak transcription	Spleen	Spleen
50	chr7:104753800-104764600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links