Variant report

Variant	rs372405563
Chromosome Location	chr2:171730647-171730648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508179	chr2:171708404-171736003	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv526140	chr2:171729643-171732497	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171730000-171734600	Weak transcription	NH-A	brain
2	chr2:171730200-171732600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:171730200-171734200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:171730200-171734400	Weak transcription	Pancreas	Pancrea
5	chr2:171730200-171734600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:171730200-171734600	Weak transcription	Hela-S3	cervix
7	chr2:171730200-171735000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr2:171730400-171731200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:171730400-171734600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:171730400-171734600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr2:171730400-171734600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:171730400-171734600	Weak transcription	Dnd41	blood
13	chr2:171730400-171734800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:171730600-171731000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:171730600-171734600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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