Variant report

Variant	rs372512409
Chromosome Location	chr15:42586733-42586734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42584658..42587621-chr15:42618841..42621037,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3311734	chr15:42585625-42587286	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3311735	chr15:42585625-42587286	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42567200-42623600	Weak transcription	Fetal Brain Male	brain
2	chr15:42568400-42604600	Weak transcription	NH-A	brain
3	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
4	chr15:42568600-42587000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:42568600-42587000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:42568600-42593000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:42568600-42602600	Weak transcription	Fetal Heart	heart
8	chr15:42568600-42630800	Weak transcription	Dnd41	blood
9	chr15:42569000-42591000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr15:42569400-42602800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:42573400-42635800	Weak transcription	Gastric	stomach
12	chr15:42573600-42587200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:42573600-42602600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:42573800-42592000	Weak transcription	Fetal Brain Female	brain
15	chr15:42573800-42605600	Weak transcription	Pancreas	Pancrea
16	chr15:42576000-42592400	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:42576200-42591600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:42576200-42593000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:42576200-42602800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:42576200-42605800	Weak transcription	Esophagus	oesophagus
21	chr15:42576400-42602000	Weak transcription	Colonic Mucosa	Colon
22	chr15:42576400-42620800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:42577000-42590000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:42577800-42616200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:42578600-42592800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:42578800-42587200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:42579000-42586800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:42579000-42592400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr15:42579000-42592400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr15:42579200-42588200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:42579200-42589800	Weak transcription	Fetal Lung	lung
32	chr15:42579200-42592400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr15:42579200-42593400	Weak transcription	Hela-S3	cervix
34	chr15:42579400-42586800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:42580600-42590400	Weak transcription	HepG2	liver
36	chr15:42580800-42586800	Strong transcription	Left Ventricle	heart
37	chr15:42581000-42587400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:42581000-42588200	Strong transcription	Liver	Liver
39	chr15:42581000-42590800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:42581000-42590800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:42581600-42601600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:42581800-42602600	Weak transcription	HMEC	breast
43	chr15:42582000-42601000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:42582000-42613400	Weak transcription	HUVEC	blood vessel
45	chr15:42583000-42587400	Strong transcription	Primary T cells from cord blood	blood
46	chr15:42583400-42590800	Weak transcription	Fetal Stomach	stomach
47	chr15:42583400-42598800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:42583800-42588000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr15:42584200-42589800	Weak transcription	Fetal Muscle Leg	muscle
50	chr15:42584200-42599200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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