Variant report

Variant	rs372518288
Chromosome Location	chr1:197893794-197893795
allele	-/AA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197369298..197369841-chr1:197893280..197894107,2	MCF-7	breast:
2	chr1:197495874..197496814-chr1:197893397..197894241,3	MCF-7	breast:
3	chr1:197584129..197584940-chr1:197893429..197894167,4	MCF-7	breast:
4	chr1:197496825..197498646-chr1:197892256..197894438,2	MCF-7	breast:
5	chr1:197661830..197662539-chr1:197893369..197893878,3	MCF-7	breast:
6	chr1:197490338..197491289-chr1:197893428..197894214,3	MCF-7	breast:
7	chr1:197744305..197744943-chr1:197893354..197894081,2	K562	blood:
8	chr1:197870531..197872562-chr1:197893700..197896625,2	K562	blood:
9	chr1:197490059..197490926-chr1:197893382..197894293,3	K562	blood:
10	chr1:197584245..197585109-chr1:197893726..197894310,2	MCF-7	breast:
11	chr1:197360706..197361276-chr1:197893436..197894290,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762214	chr1:197821769-197897496	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv3436153	chr1:197892029-197896227	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3441514	chr1:197892954-197895502	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2520814	chr1:197893621-197895087	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1002483	chr1:197893650-197894544	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197892000-197895600	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links