Variant report

Variant	rs372684798
Chromosome Location	chr3:78778523-78778524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78766178..78768497-chr3:78778226..78779744,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1842222	chr3:78744206-78778901	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3404191	chr3:78777462-78781660	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78766600-78783000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:78772000-78792200	Weak transcription	HepG2	liver
3	chr3:78774400-78783200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:78777200-78778800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:78777200-78779400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:78777200-78779400	Enhancers	Brain Germinal Matrix	brain
7	chr3:78777400-78778600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:78777400-78778800	Enhancers	NHDF-Ad	bronchial
9	chr3:78777400-78779000	Enhancers	Fetal Lung	lung
10	chr3:78777400-78779400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:78777400-78780000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:78777400-78780400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:78777600-78778600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr3:78777600-78778600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr3:78777600-78780000	Enhancers	Fetal Brain Male	brain
16	chr3:78777800-78778800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:78777800-78779000	Enhancers	Osteobl	bone
18	chr3:78777800-78779200	Enhancers	Fetal Stomach	stomach
19	chr3:78777800-78779400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:78777800-78779400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:78777800-78779400	Enhancers	Fetal Brain Female	brain
22	chr3:78777800-78780600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:78778000-78778600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr3:78778000-78778600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:78778000-78778600	Enhancers	Fetal Kidney	kidney
26	chr3:78778000-78778800	Enhancers	Fetal Muscle Leg	muscle
27	chr3:78778000-78778800	Enhancers	Ovary	ovary
28	chr3:78778000-78778800	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:78778000-78778800	Enhancers	HSMM	muscle
30	chr3:78778000-78779000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr3:78778000-78779200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:78778000-78779400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr3:78778000-78779400	Enhancers	Colon Smooth Muscle	Colon
34	chr3:78778200-78778800	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr3:78778200-78778800	Enhancers	HSMMtube	muscle
36	chr3:78778200-78779200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr3:78778200-78779200	Enhancers	Brain Cingulate Gyrus	brain
38	chr3:78778200-78782800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr3:78778400-78778600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:78778400-78778800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:78778400-78778800	Enhancers	Brain Anterior Caudate	brain
42	chr3:78778400-78779000	Enhancers	Brain Hippocampus Middle	brain
43	chr3:78778400-78779200	Enhancers	Adipose Nuclei	Adipose
44	chr3:78778400-78779600	Enhancers	Brain Angular Gyrus	brain

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