Variant report

Variant	rs372733
Chromosome Location	chr5:75660513-75660514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs192196	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455429	0.81[EUR][1000 genomes]
rs246784	0.90[EUR][1000 genomes]
rs246785	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs246789	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913245	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972864	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972865	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972866	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405030	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235697	0.91[EUR][1000 genomes]
rs4703706	0.86[EUR][1000 genomes]
rs4704307	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75649800-75662600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:75657000-75661600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr5:75657200-75660800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:75659000-75660600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:75659400-75660600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:75659600-75662400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:75660000-75660600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:75660000-75663600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:75660200-75661200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:75660200-75663600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:75660200-75663600	Weak transcription	NHEK	skin
12	chr5:75660200-75667800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:75660200-75667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:75660200-75668000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:75660400-75660800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:75660400-75666200	Enhancers	K562	blood
17	chr5:75660400-75667800	Weak transcription	HepG2	liver
18	chr5:75660400-75668000	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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