Variant report

Variant	rs372772170
Chromosome Location	chr14:104315267-104315268
allele	-/AG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:104314259-104315319	MCF-7	breast:	n/a	chr14:104314387-104314397
2	MAX	chr14:104313794-104315443	MCF-7	breast:	n/a	chr14:104314387-104314397
3	NR2F2	chr14:104313641-104315485	MCF-7	breast:	n/a	n/a
4	ZEB1	chr14:104313842-104315405	HepG2	liver:	n/a	n/a
5	ZNF263	chr14:104314022-104315379	HEK293-T-REx	kidney:	n/a	chr14:104315063-104315072
6	NR2F2	chr14:104313546-104315385	HepG2	liver:	n/a	n/a
7	RCOR1	chr14:104315162-104315676	HepG2	liver:	n/a	n/a
8	POLR2A	chr14:104315224-104315384	MCF10A-Er-Src	breast:	n/a	n/a
9	RUNX3	chr14:104315162-104315381	GM12878	blood:	n/a	n/a
10	HDAC2	chr14:104314930-104315329	HepG2	liver:	n/a	n/a
11	POLR2A	chr14:104315253-104315345	MCF-7	breast:	n/a	n/a
12	MYC	chr14:104315161-104315291	MCF-7	breast:	n/a	n/a
13	MAX	chr14:104313517-104315532	HepG2	liver:	n/a	chr14:104314387-104314397
14	MXI1	chr14:104313573-104315413	HepG2	liver:	n/a	n/a
15	HDAC2	chr14:104313768-104315446	MCF-7	breast:	n/a	chr14:104314434-104314443

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:104315223-104315273	GM19239	blood:	n/a
2	chr14:104315223-104315273	AG04449	skin:	fetal
3	chr14:104315223-104315273	BE2_C	brain:	n/a
4	chr14:104315223-104315273	RPTEC	kidney:	n/a
5	chr14:104315223-104315273	HL-60	blood:	n/a
6	chr14:104315223-104315273	AG09319	gingival:	n/a
7	chr14:104315223-104315273	ovcar-3	ovarian:	n/a
8	chr14:104315223-104315273	PANC-1	pancreas:	n/a
9	chr14:104315223-104315273	HCM	heart:	n/a
10	chr14:104315223-104315273	AG09309	skin:	n/a
11	chr14:104315223-104315273	ProgFib	skin:	n/a
12	chr14:104315223-104315273	ECC-1	luminal epithelium:	n/a
13	chr14:104315223-104315273	GM06990	blood:	n/a
14	chr14:104315223-104315273	SK-N-SH	brain:	n/a
15	chr14:104315223-104315273	NHBE	bronchial:	n/a
16	chr14:104315223-104315273	BJ	skin:	n/a
17	chr14:104315223-104315273	H1-hESC	embryonic stem cell:	embryo
18	chr14:104315223-104315273	HEEpiC	esophagus:	n/a
19	chr14:104315223-104315273	HRPEpiC	eye:	n/a
20	chr14:104315223-104315273	HUVEC	blood vessel:	n/a
21	chr14:104315223-104315273	HMEC	breast:	n/a
22	chr14:104315223-104315273	HNPCEpiC	eye:	n/a
23	chr14:104315223-104315273	AoSMC	blood vessel:	n/a
24	chr14:104315223-104315273	HRE	kidney:	n/a
25	chr14:104315223-104315273	NH-A	brain:	n/a
26	chr14:104315223-104315273	HepG2	liver:	n/a
27	chr14:104315223-104315273	Caco-2	colon:	n/a
28	chr14:104315223-104315273	MCF-7	breast:	n/a
29	chr14:104315223-104315273	HPAEpiC	pulmonary alveolar:	n/a
30	chr14:104315223-104315273	U87	brain:	n/a
31	chr14:104315223-104315273	SK-N-MC	brain:	n/a
32	chr14:104315223-104315273	LNCaP	prostate:	n/a
33	chr14:104315223-104315273	CMK	blood:	n/a
34	chr14:104315223-104315273	PrEC	prostate:	n/a
35	chr14:104315223-104315273	SKMC	muscle:	n/a
36	chr14:104315223-104315273	IMR90	lung:	fetal
37	chr14:104315223-104315273	K562	blood:	n/a
38	chr14:104315223-104315273	NB4	blood:	n/a
39	chr14:104315223-104315273	HCPEpiC	choroid plexus:	n/a
40	chr14:104315223-104315273	NHDF-neo	bronchial:	n/a
41	chr14:104315223-104315273	HAEpiC	amniotic membrane:	n/a
42	chr14:104315223-104315273	A549	lung:	n/a
43	chr14:104315223-104315273	Jurkat	blood:	n/a
44	chr14:104315223-104315273	GM12878	blood:	n/a
45	chr14:104315223-104315273	SAEC	small airway:	n/a
46	chr14:104315223-104315273	MCF10A-Er-Src	breast:	n/a
47	chr14:104315223-104315273	PFSK-1	brain:	n/a
48	chr14:104315223-104315273	HRCEpiC	kidney:	n/a
49	chr14:104315223-104315273	HCT-116	colon:	n/a
50	chr14:104315223-104315273	NT2-D1	testis:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104314115..104315805-chr14:104327365..104329517,2	MCF-7	breast:
2	chr14:104313555..104317821-chr14:104384318..104388009,4	MCF-7	breast:

No data

Variant related genes	Relation type
PPP1R13B	TF binding region
PPP1R13B	CpG island
ENSG00000156411	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
9	esv1838047	chr14:104283104-104359121	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv902321	chr14:104283104-104378087	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	esv1818596	chr14:104312697-104359121	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	esv1836134	chr14:104312697-104359121	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	esv3407760	chr14:104312824-104315372	Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	esv1837236	chr14:104313426-104332759	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	nsv566028	chr14:104314023-104332759	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104313000-104315800	Active TSS	Brain Cingulate Gyrus	brain
2	chr14:104313200-104315400	Active TSS	Rectal Smooth Muscle	rectum
3	chr14:104314000-104315400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr14:104314000-104315600	Enhancers	Fetal Lung	lung
5	chr14:104314200-104315400	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr14:104314400-104315400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr14:104314400-104315800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr14:104314600-104315400	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr14:104314600-104315400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr14:104314600-104316200	Enhancers	Fetal Heart	heart
11	chr14:104314800-104315400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:104314800-104315400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:104314800-104315400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:104314800-104315400	Enhancers	Liver	Liver
15	chr14:104314800-104316200	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr14:104314800-104320200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:104315000-104315400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:104315000-104315400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
19	chr14:104315000-104315400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:104315000-104315400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr14:104315000-104315400	Flanking Active TSS	Fetal Intestine Large	intestine
22	chr14:104315000-104315600	Enhancers	Placenta Amnion	Placenta Amnion
23	chr14:104315000-104315800	Bivalent/Poised TSS	Fetal Brain Female	brain
24	chr14:104315000-104315800	Enhancers	Pancreas	Pancrea
25	chr14:104315000-104316000	Enhancers	Left Ventricle	heart
26	chr14:104315000-104316000	Enhancers	Spleen	Spleen
27	chr14:104315000-104316200	Flanking Active TSS	HepG2	liver
28	chr14:104315000-104320400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:104315000-104320400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr14:104315200-104315400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
31	chr14:104315200-104315400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr14:104315200-104315400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:104315200-104315400	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr14:104315200-104315400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr14:104315200-104315400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:104315200-104315400	Enhancers	Brain Substantia Nigra	brain
37	chr14:104315200-104315400	Active TSS	Colonic Mucosa	Colon
38	chr14:104315200-104315400	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr14:104315200-104315400	Enhancers	NHEK	skin
40	chr14:104315200-104315600	Enhancers	Placenta	Placenta
41	chr14:104315200-104315800	Enhancers	Gastric	stomach
42	chr14:104315200-104316000	Enhancers	Esophagus	oesophagus
43	chr14:104315200-104316000	Genic enhancers	Fetal Intestine Small	intestine
44	chr14:104315200-104316000	Enhancers	Right Ventricle	heart
45	chr14:104315200-104320400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr14:104315200-104320400	Weak transcription	Lung	lung
47	chr14:104315200-104327600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links