Variant report

Variant	rs372773620
Chromosome Location	chr1:85070963-85070964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84886211..84887078-chr1:85070133..85071055,2	K562	blood:
2	chr1:85038959..85041198-chr1:85070414..85071999,2	K562	blood:

Variant related genes	Relation type
ENSG00000117151	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3364770	chr1:85069339-85078334	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85069600-85077400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:85070200-85071200	ZNF genes & repeats	Brain Anterior Caudate	brain
3	chr1:85070200-85071400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
4	chr1:85070200-85072000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:85070200-85077400	Weak transcription	Fetal Heart	heart
6	chr1:85070400-85071000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:85070400-85071000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:85070400-85071000	Enhancers	K562	blood
9	chr1:85070400-85071200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr1:85070400-85071600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:85070400-85072000	ZNF genes & repeats	Liver	Liver
12	chr1:85070400-85079600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:85070400-85085200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:85070600-85071000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr1:85070600-85071200	Enhancers	Stomach Smooth Muscle	stomach
16	chr1:85070600-85071200	Enhancers	Hela-S3	cervix
17	chr1:85070600-85071600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:85070600-85071800	ZNF genes & repeats	Brain Hippocampus Middle	brain
19	chr1:85070800-85071000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:85070800-85071200	Enhancers	Colon Smooth Muscle	Colon
21	chr1:85070800-85072000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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