Variant report

Variant	rs372803
Chromosome Location	chr12:120257166-120257167
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120256458..120258729-chr12:120260465..120262298,2	K562	blood:
2	chr12:120254533..120258231-chr12:120258539..120262358,3	MCF-7	breast:
3	chr12:120255241..120258410-chr12:120258603..120261965,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10744743	0.89[EUR][1000 genomes]
rs10774514	0.89[EUR][1000 genomes]
rs10774515	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10774516	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1182807	0.89[EUR][1000 genomes]
rs1796127	0.89[EUR][1000 genomes]
rs203336	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203340	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs203356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107661	0.84[EUR][1000 genomes]
rs280582	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs280583	0.86[EUR][1000 genomes]
rs280588	0.90[EUR][1000 genomes]
rs280589	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs377876	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3847959	0.86[EUR][1000 genomes]
rs3847960	0.84[EUR][1000 genomes]
rs430998	0.86[EUR][1000 genomes]
rs435136	0.89[EUR][1000 genomes]
rs450902	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs473430	0.88[EUR][1000 genomes]
rs4767847	0.89[EUR][1000 genomes]
rs4767848	0.89[EUR][1000 genomes]
rs4767849	0.85[EUR][1000 genomes]
rs574967	0.85[EUR][1000 genomes]
rs6490270	0.86[EUR][1000 genomes]
rs7294469	0.87[EUR][1000 genomes]
rs7308076	0.89[EUR][1000 genomes]
rs740032	0.88[EUR][1000 genomes]
rs804709	0.84[EUR][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120209400-120293600	Weak transcription	Primary T cells from cord blood	blood
2	chr12:120223000-120314400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr12:120241600-120276600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:120242600-120259800	Weak transcription	NH-A	brain
5	chr12:120242600-120260200	Weak transcription	HUVEC	blood vessel
6	chr12:120242600-120276600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:120242600-120276800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:120242600-120279000	Weak transcription	Fetal Intestine Small	intestine
9	chr12:120242600-120279400	Weak transcription	Fetal Intestine Large	intestine
10	chr12:120242600-120293800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr12:120242600-120294400	Weak transcription	Fetal Kidney	kidney
12	chr12:120242800-120287800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr12:120243200-120288200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr12:120243400-120259400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr12:120245200-120273000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr12:120245200-120276400	Weak transcription	Fetal Muscle Leg	muscle
17	chr12:120245400-120258400	Strong transcription	Dnd41	blood
18	chr12:120245600-120285200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:120247000-120257200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr12:120247000-120274600	Weak transcription	HMEC	breast
21	chr12:120247200-120259800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:120247200-120274400	Weak transcription	NHEK	skin
23	chr12:120247200-120285800	Weak transcription	NHLF	lung
24	chr12:120247400-120264400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr12:120247400-120285800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr12:120247800-120272800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:120252000-120261600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr12:120253400-120266000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:120253600-120257800	Strong transcription	Fetal Thymus	thymus
30	chr12:120253600-120266800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr12:120253800-120257200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:120253800-120257800	Strong transcription	Thymus	Thymus
33	chr12:120253800-120258000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr12:120253800-120258200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr12:120253800-120259800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr12:120253800-120272400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr12:120254000-120257400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr12:120254000-120261200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr12:120254200-120257400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:120254200-120258000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr12:120254400-120257400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr12:120254600-120259200	Weak transcription	NHDF-Ad	bronchial
43	chr12:120254800-120286400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr12:120254800-120314600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr12:120255200-120258200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:120255800-120257200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr12:120255800-120257800	Strong transcription	HepG2	liver
48	chr12:120255800-120258200	Strong transcription	A549	lung
49	chr12:120255800-120264600	Weak transcription	Osteobl	bone
50	chr12:120256000-120257800	Strong transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links