Variant report

Variant	rs372836613
Chromosome Location	chr5:16671099-16671100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16670338..16672249-chr5:16672358..16674195,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522062	chr5:16670618-16679966	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16658800-16672600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:16661600-16689400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:16661800-16700000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:16663000-16671400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:16663000-16674800	Weak transcription	Aorta	Aorta
6	chr5:16663000-16712400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:16663200-16673000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:16663400-16676600	Strong transcription	A549	lung
9	chr5:16663600-16695400	Strong transcription	Fetal Intestine Small	intestine
10	chr5:16663800-16676600	Strong transcription	Duodenum Mucosa	Duodenum
11	chr5:16663800-16690800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:16663800-16694400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:16663800-16698000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:16663800-16702400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:16663800-16713400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:16664000-16671200	Genic enhancers	Fetal Lung	lung
17	chr5:16664000-16676800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:16664000-16701000	Strong transcription	Fetal Intestine Large	intestine
19	chr5:16664000-16702000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:16664000-16702200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr5:16664000-16702400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:16664200-16702200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:16664600-16690600	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr5:16664800-16674600	Weak transcription	Small Intestine	intestine
25	chr5:16664800-16677600	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr5:16665600-16676800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:16665600-16699200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:16666200-16676800	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:16666200-16680600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:16667200-16674800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:16667400-16683600	Weak transcription	Liver	Liver
32	chr5:16667600-16673800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:16667600-16676600	Strong transcription	HSMMtube	muscle
34	chr5:16667800-16672400	Weak transcription	Fetal Kidney	kidney
35	chr5:16667800-16673400	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr5:16667800-16674800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr5:16667800-16674800	Weak transcription	Stomach Mucosa	stomach
38	chr5:16667800-16675000	Weak transcription	Left Ventricle	heart
39	chr5:16667800-16676400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr5:16667800-16677400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr5:16667800-16680000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr5:16667800-16701000	Weak transcription	Right Ventricle	heart
43	chr5:16668000-16673400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr5:16668000-16676000	Strong transcription	Brain Hippocampus Middle	brain
45	chr5:16668200-16676400	Strong transcription	Placenta	Placenta
46	chr5:16668600-16672800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr5:16669200-16671200	Weak transcription	Hela-S3	cervix
48	chr5:16669200-16672800	Weak transcription	Fetal Thymus	thymus
49	chr5:16669400-16671600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr5:16669600-16671200	Genic enhancers	HUVEC	blood vessel

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