Variant report

Variant	rs372844163
Chromosome Location	chr11:32850537-32850538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr11:32850433-32851666	PBDE	blood:	n/a	chr11:32851034-32851055 chr11:32851037-32851053

No.	Distal block	Cell Line	Cell type
1	chr11:32849868..32852880-chr11:32911360..32916794,6	MCF-7	breast:
2	chr11:32850001..32854483-chr11:32912810..32915962,5	MCF-7	breast:
3	chr11:32850121..32852277-chr11:33088797..33091531,2	MCF-7	breast:

Variant related genes	Relation type
PRRG4	TF binding region
ENSG00000176148	Chromatin interaction
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	nsv897191	chr11:32805169-32903263	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv897192	chr11:32828760-32903263	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv897193	chr11:32838288-32903263	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv825818	chr11:32849904-32852165	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32837400-32850800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:32843200-32850800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:32843800-32850600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:32849200-32850600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:32849400-32850800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr11:32850200-32850600	Enhancers	Liver	Liver
7	chr11:32850200-32850600	Enhancers	GM12878-XiMat	blood
8	chr11:32850400-32850600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr11:32850400-32850600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:32850400-32850600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:32850400-32850600	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:32850400-32850600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:32850400-32850600	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:32850400-32850600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr11:32850400-32850600	Flanking Active TSS	Hela-S3	cervix
16	chr11:32850400-32850600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:32850400-32850600	Flanking Active TSS	NHEK	skin
18	chr11:32850400-32850800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:32850400-32850800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr11:32850400-32850800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:32850400-32850800	Enhancers	Colon Smooth Muscle	Colon
22	chr11:32850400-32850800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr11:32850400-32850800	Active TSS	Fetal Intestine Large	intestine
24	chr11:32850400-32850800	Enhancers	Fetal Intestine Small	intestine
25	chr11:32850400-32850800	Enhancers	Stomach Mucosa	stomach
26	chr11:32850400-32851000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:32850400-32851800	Active TSS	HMEC	breast

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