Variant report

Variant	rs372897850
Chromosome Location	chr16:73079837-73079838
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72961643..72964004-chr16:73079315..73080843,2	MCF-7	breast:
2	chr16:73013583..73015473-chr16:73077986..73080970,2	MCF-7	breast:
3	chr16:73079572..73082318-chr20:47893327..47894855,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177410	Chromatin interaction
ENSG00000124201	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv827730	chr16:73066699-73115642	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv827732	chr16:73069343-73116594	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv827733	chr16:73075114-73103721	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv1819498	chr16:73079212-73092845	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73067800-73081400	Weak transcription	Small Intestine	intestine
2	chr16:73070400-73080400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr16:73071200-73081200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr16:73071600-73081200	Weak transcription	Esophagus	oesophagus
5	chr16:73072200-73080000	Weak transcription	Stomach Mucosa	stomach
6	chr16:73072400-73080000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr16:73072400-73080800	Weak transcription	Spleen	Spleen
8	chr16:73072600-73080200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr16:73074800-73080600	Weak transcription	HMEC	breast
10	chr16:73075000-73080800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr16:73075400-73080000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr16:73076000-73080600	Enhancers	Psoas Muscle	Psoas
13	chr16:73076000-73081000	Enhancers	Placenta	Placenta
14	chr16:73076200-73081000	Enhancers	Fetal Muscle Leg	muscle
15	chr16:73076200-73081200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr16:73076400-73080000	Enhancers	Brain Hippocampus Middle	brain
17	chr16:73076400-73080200	Enhancers	Adipose Nuclei	Adipose
18	chr16:73076600-73080000	Enhancers	HepG2	liver
19	chr16:73076600-73080800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr16:73076600-73081000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr16:73076600-73081200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr16:73077000-73080000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr16:73077000-73080000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr16:73077000-73080800	Enhancers	Fetal Kidney	kidney
25	chr16:73077000-73081200	Enhancers	Fetal Heart	heart
26	chr16:73077200-73081400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr16:73077400-73080000	Enhancers	NHDF-Ad	bronchial
28	chr16:73077400-73080600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr16:73077600-73080200	Weak transcription	Lung	lung
30	chr16:73077600-73080800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr16:73077800-73081200	Weak transcription	Colonic Mucosa	Colon
32	chr16:73078000-73080000	Enhancers	Hela-S3	cervix
33	chr16:73078000-73080200	Weak transcription	Right Ventricle	heart
34	chr16:73078000-73080200	Enhancers	Osteobl	bone
35	chr16:73078400-73080000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr16:73078400-73080000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr16:73078400-73080000	Enhancers	HSMM	muscle
38	chr16:73078400-73080200	Weak transcription	Aorta	Aorta
39	chr16:73078400-73080200	Weak transcription	Brain Anterior Caudate	brain
40	chr16:73078400-73080200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr16:73078400-73080400	Enhancers	Colon Smooth Muscle	Colon
42	chr16:73078400-73080600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr16:73078400-73080800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
44	chr16:73078400-73081000	Enhancers	Right Atrium	heart
45	chr16:73078600-73080000	Weak transcription	Gastric	stomach
46	chr16:73078600-73080000	Active TSS	GM12878-XiMat	blood
47	chr16:73078600-73080000	Weak transcription	NH-A	brain
48	chr16:73078600-73080800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr16:73078600-73080800	Weak transcription	Brain Angular Gyrus	brain
50	chr16:73078600-73080800	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links