Variant report

Variant	rs372921303
Chromosome Location	chr6:15662672-15662673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15660394..15662870-chr6:15679792..15681475,2	K562	blood:
2	chr6:15661311..15664347-chr6:16127901..16131243,6	K562	blood:
3	chr6:15659552..15664792-chr6:16126837..16130644,6	MCF-7	breast:
4	chr1:153621962..153623668-chr6:15660534..15662735,2	MCF-7	breast:
5	chr6:15661088..15663422-chr6:16128985..16131574,3	K562	blood:
6	chr6:15655170..15659272-chr6:15659508..15662983,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3373756	chr6:15661798-15664346	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15661800-15663400	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:15661800-15663400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15661800-15663600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:15662000-15662800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:15662000-15662800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:15662000-15663400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:15662000-15663400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:15662000-15663400	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:15662000-15663400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:15662000-15663400	Active TSS	Fetal Kidney	kidney
11	chr6:15662000-15663400	Active TSS	NHDF-Ad	bronchial
12	chr6:15662000-15663600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr6:15662000-15663600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:15662000-15663600	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr6:15662000-15663600	Active TSS	Muscle Satellite Cultured Cells	--
16	chr6:15662000-15663600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:15662000-15663600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:15662000-15663600	Active TSS	Brain Angular Gyrus	brain
19	chr6:15662000-15663600	Active TSS	Brain Anterior Caudate	brain
20	chr6:15662000-15663600	Active TSS	Right Ventricle	heart
21	chr6:15662000-15663600	Active TSS	Stomach Smooth Muscle	stomach
22	chr6:15662000-15663800	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr6:15662000-15663800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:15662200-15662800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:15662200-15663200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:15662200-15663200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:15662200-15663200	Active TSS	Small Intestine	intestine
28	chr6:15662200-15663400	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr6:15662200-15663400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:15662200-15663400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:15662200-15663400	Active TSS	Pancreas	Pancrea
32	chr6:15662200-15663600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:15662200-15663600	Active TSS	A549	lung
34	chr6:15662200-15663600	Active TSS	NHEK	skin
35	chr6:15662200-15663800	Active TSS	Aorta	Aorta
36	chr6:15662200-15663800	Active TSS	Ovary	ovary
37	chr6:15662200-15663800	Active TSS	NHLF	lung
38	chr6:15662400-15662800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
39	chr6:15662400-15662800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:15662400-15662800	Flanking Active TSS	Fetal Brain Female	brain
41	chr6:15662400-15663200	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
42	chr6:15662400-15663200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:15662400-15663400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:15662400-15663400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:15662400-15663400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:15662400-15663400	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr6:15662400-15663400	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr6:15662400-15663400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:15662400-15663400	Active TSS	Primary T cells from cord blood	blood
50	chr6:15662400-15663400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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