Variant report

Variant	rs372936309
Chromosome Location	chr8:35184779-35184780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35180400-35184800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:35182800-35186400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:35182800-35188000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:35183000-35186400	Enhancers	Fetal Kidney	kidney
5	chr8:35183200-35185400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:35183200-35185600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr8:35183400-35185000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:35183600-35185400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:35183800-35185400	Enhancers	Fetal Muscle Leg	muscle
10	chr8:35183800-35185600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:35183800-35185600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:35184000-35185200	Enhancers	Fetal Muscle Trunk	muscle
13	chr8:35184000-35185400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:35184000-35185600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:35184400-35185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:35184400-35185400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:35184400-35185400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:35184400-35185600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:35184400-35185600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr8:35184400-35185600	Enhancers	HSMMtube	muscle
21	chr8:35184400-35186000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr8:35184600-35185400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:35184600-35185400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links