Variant report

Variant	rs3729685
Chromosome Location	chr3:178928581-178928582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11539415	1.00[LWK][hapmap]
rs7637330	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv878038	chr3:178924867-178962897	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178899200-178951800	Weak transcription	K562	blood
2	chr3:178900000-178929800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:178906400-178962400	Weak transcription	HepG2	liver
4	chr3:178909000-178931400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:178909000-178947000	Weak transcription	Ovary	ovary
6	chr3:178911200-178953400	Weak transcription	Gastric	stomach
7	chr3:178912400-178978600	Weak transcription	Right Ventricle	heart
8	chr3:178912600-178947800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:178913000-178930800	Weak transcription	Left Ventricle	heart
10	chr3:178913000-178948200	Weak transcription	Psoas Muscle	Psoas
11	chr3:178913200-178945200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:178913200-178947000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:178913200-178947000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:178913800-178954000	Weak transcription	Fetal Heart	heart
15	chr3:178913800-178969000	Weak transcription	Small Intestine	intestine
16	chr3:178914600-178945200	Weak transcription	HMEC	breast
17	chr3:178914800-178933400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:178914800-178941400	Weak transcription	GM12878-XiMat	blood
19	chr3:178914800-178942800	Weak transcription	NH-A	brain
20	chr3:178914800-178948000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:178914800-178972800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:178915400-178929400	Weak transcription	HSMMtube	muscle
23	chr3:178915400-178931000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:178915400-178946000	Weak transcription	Stomach Mucosa	stomach
25	chr3:178915400-178947000	Weak transcription	NHDF-Ad	bronchial
26	chr3:178915600-178947600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:178915800-178965200	Weak transcription	Hela-S3	cervix
28	chr3:178916600-178932600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr3:178916800-178930000	Strong transcription	Primary B cells from cord blood	blood
30	chr3:178917200-178932200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr3:178917400-178932600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:178917400-178932600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:178917400-178948400	Weak transcription	Esophagus	oesophagus
34	chr3:178917600-178930000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:178917600-178931600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:178917600-178953800	Weak transcription	Colonic Mucosa	Colon
37	chr3:178918600-178931600	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr3:178918600-178932800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:178918800-178932600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr3:178919800-178947000	Weak transcription	NHLF	lung
41	chr3:178920000-178947200	Weak transcription	Brain Angular Gyrus	brain
42	chr3:178920200-178929000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:178920200-178931200	Weak transcription	Lung	lung
44	chr3:178920200-178947800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:178920200-178948800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:178920200-178952800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:178920200-178968400	Weak transcription	Spleen	Spleen
48	chr3:178921200-178948800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr3:178922200-178941400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr3:178922200-178945600	Weak transcription	HUVEC	blood vessel

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