Variant report

Variant	rs372996365
Chromosome Location	chr6:28770598-28770599
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000204709	Chromatin interaction
ENSG00000225595	Chromatin interaction
ENSG00000225173	Chromatin interaction
ENSG00000224157	Chromatin interaction
ENSG00000265764	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3410540	chr6:28770455-28785112	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3322630	chr6:28770519-28785092	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv3486939	chr6:28770525-28785051	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3486940	chr6:28770525-28785051	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28763400-28770600	Weak transcription	HMEC	breast
2	chr6:28770200-28771600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:28770200-28771800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:28770200-28771800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:28770400-28770600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr6:28770400-28770600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:28770400-28770600	Flanking Bivalent TSS/Enh	HepG2	liver
8	chr6:28770400-28770800	Active TSS	Hela-S3	cervix
9	chr6:28770400-28771200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:28770400-28771400	Enhancers	GM12878-XiMat	blood
11	chr6:28770400-28771600	Active TSS	H9 Cell Line	embryonic stem cell
12	chr6:28770400-28771600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:28770400-28771600	Active TSS	K562	blood
14	chr6:28770400-28771800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:28770400-28771800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr6:28770400-28771800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
17	chr6:28770400-28771800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
18	chr6:28770400-28771800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:28770400-28771800	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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