Variant report

Variant	rs373061042
Chromosome Location	chr6:28770400-28770401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28756573..28759569-chr6:28769791..28772080,4	K562	blood:
2	chr6:28769403..28772112-chr6:28910261..28912768,2	K562	blood:
3	chr6:28769803..28772263-chr6:28862688..28865946,3	MCF-7	breast:
4	chr6:28761012..28764011-chr6:28768099..28770643,2	K562	blood:
5	chr6:28768996..28771268-chr6:28774440..28778213,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM27-19	chr6:28770349-28770592	NONHSAT108485

Variant related genes	Relation type
ENSG00000224157	Chromatin interaction
ENSG00000265764	Chromatin interaction
ENSG00000204709	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28763400-28770600	Weak transcription	HMEC	breast
2	chr6:28764600-28770400	Weak transcription	GM12878-XiMat	blood
3	chr6:28770200-28770400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:28770200-28770400	Flanking Active TSS	K562	blood
5	chr6:28770200-28771600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:28770200-28771800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:28770200-28771800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr6:28770400-28770600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr6:28770400-28770600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:28770400-28770600	Flanking Bivalent TSS/Enh	HepG2	liver
11	chr6:28770400-28770800	Active TSS	Hela-S3	cervix
12	chr6:28770400-28771200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:28770400-28771400	Enhancers	GM12878-XiMat	blood
14	chr6:28770400-28771600	Active TSS	H9 Cell Line	embryonic stem cell
15	chr6:28770400-28771600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:28770400-28771600	Active TSS	K562	blood
17	chr6:28770400-28771800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr6:28770400-28771800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr6:28770400-28771800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr6:28770400-28771800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:28770400-28771800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:28770400-28771800	Active TSS	A549	lung

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