Variant report

Variant	rs373061864
Chromosome Location	chr3:133748566-133748567
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133683547..133684239-chr3:133747628..133748622,2	MCF-7	breast:
2	chr3:133646547..133649417-chr3:133747538..133750277,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221972	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3426811	chr3:133747687-133750235	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133746200-133749200	Active TSS	Right Atrium	heart
2	chr3:133746600-133749200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:133747000-133749000	Bivalent/Poised TSS	Colonic Mucosa	Colon
4	chr3:133747200-133748600	Flanking Active TSS	HUVEC	blood vessel
5	chr3:133747400-133748600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
6	chr3:133747400-133748800	Active TSS	Gastric	stomach
7	chr3:133747600-133748600	Flanking Bivalent TSS/Enh	Placenta	Placenta
8	chr3:133747600-133749000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
9	chr3:133747800-133748600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
10	chr3:133747800-133748600	Flanking Bivalent TSS/Enh	HepG2	liver
11	chr3:133747800-133749200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
12	chr3:133747800-133749400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
13	chr3:133747800-133749600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr3:133747800-133749800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
17	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
18	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
19	chr3:133748000-133748600	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
21	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
22	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	HMEC	breast
23	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Osteobl	bone
24	chr3:133748000-133748800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
25	chr3:133748000-133748800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:133748000-133748800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:133748000-133748800	Bivalent/Poised TSS	Spleen	Spleen
28	chr3:133748000-133748800	Bivalent/Poised TSS	HSMMtube	muscle
29	chr3:133748000-133748800	Bivalent/Poised TSS	NHDF-Ad	bronchial
30	chr3:133748000-133748800	Bivalent/Poised TSS	NHLF	lung
31	chr3:133748000-133749000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:133748000-133749000	Active TSS	Placenta Amnion	Placenta Amnion
33	chr3:133748000-133749200	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr3:133748000-133749200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
35	chr3:133748000-133749200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:133748000-133749200	Active TSS	Aorta	Aorta
37	chr3:133748000-133749400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
38	chr3:133748000-133749400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr3:133748000-133749400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:133748000-133749400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:133748000-133749400	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr3:133748000-133749600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
43	chr3:133748000-133749600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr3:133748200-133748600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr3:133748200-133748600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
46	chr3:133748200-133748600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr3:133748200-133748600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:133748200-133748600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr3:133748200-133748600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
50	chr3:133748200-133748600	Flanking Bivalent TSS/Enh	Thymus	Thymus

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