Variant report

Variant	rs373155663
Chromosome Location	chr15:43802737-43802738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr15:43802372-43803084	H1-hESC	embryonic stem cell:	n/a	chr15:43803054-43803065 chr15:43803051-43803065
2	YY1	chr15:43802312-43803181	SK-N-SH	brain:	n/a	chr15:43803054-43803065 chr15:43803051-43803065
3	ARID3A	chr15:43802464-43802872	K562	blood:	n/a	n/a
4	YY1	chr15:43802508-43803060	A549	lung:	n/a	n/a
5	POLR2A	chr15:43802713-43803283	GM12878	blood:	n/a	n/a
6	NFYB	chr15:43802589-43803570	K562	blood:	n/a	chr15:43803093-43803103 chr15:43803090-43803102 chr15:43803088-43803103
7	GATA2	chr15:43802422-43802977	HUVEC	blood vessel:	n/a	n/a
8	NR2F2	chr15:43801970-43803494	K562	blood:	n/a	n/a
9	POLR2A	chr15:43801831-43803564	U87	brain:	n/a	n/a
10	MYC	chr15:43801889-43804027	NB4	blood:	n/a	chr15:43802987-43802997
11	STAT5A	chr15:43802622-43803525	GM12878	blood:	n/a	n/a
12	MAX	chr15:43802595-43803525	ECC-1	luminal epithelium:	n/a	chr15:43802987-43802997
13	EP300	chr15:43802656-43802856	GM12878	blood:	n/a	n/a
14	POLR2A	chr15:43802348-43803177	K562	blood:	n/a	n/a
15	MAZ	chr15:43801988-43803525	K562	blood:	n/a	chr15:43802987-43802997
16	POLR2A	chr15:43802398-43803253	PANC-1	pancreas:	n/a	n/a
17	MXI1	chr15:43802544-43803554	GM12878	blood:	n/a	n/a
18	POLR2A	chr15:43802639-43803501	ECC-1	luminal epithelium:	n/a	n/a
19	POLR2A	chr15:43801796-43803795	K562	blood:	n/a	n/a
20	GATA3	chr15:43802581-43802970	SH-SY5Y	brain:	n/a	n/a
21	EP300	chr15:43802019-43803267	K562	blood:	n/a	chr15:43803049-43803065
22	MAX	chr15:43802311-43804023	K562	blood:	n/a	chr15:43802987-43802997
23	MAX	chr15:43802688-43803407	A549	lung:	n/a	chr15:43802987-43802997
24	POLR2A	chr15:43802580-43803146	GM12892	blood:	n/a	n/a
25	CHD2	chr15:43802607-43803463	GM12878	blood:	n/a	chr15:43803049-43803059
26	SP1	chr15:43802386-43803485	H1-hESC	embryonic stem cell:	n/a	chr15:43803072-43803082 chr15:43803050-43803059 chr15:43803049-43803061 chr15:43803072-43803082 chr15:43802982-43802996 chr15:43802926-43802937 chr15:43802928-43802937 chr15:43802974-43802984 chr15:43802927-43802937
27	POLR2A	chr15:43802719-43803161	GM12878	blood:	n/a	n/a
28	POLR2A	chr15:43802663-43802928	GM12891	blood:	n/a	n/a
29	UBTF	chr15:43801956-43803428	K562	blood:	n/a	n/a
30	HDAC2	chr15:43802416-43802948	K562	blood:	n/a	n/a
31	CEBPD	chr15:43802339-43803065	K562	blood:	n/a	n/a
32	RCOR1	chr15:43801818-43804089	K562	blood:	n/a	n/a
33	CTCF	chr15:43801842-43804325	SK-N-SH	brain:	n/a	chr15:43803948-43803961 chr15:43803106-43803119
34	YY1	chr15:43802507-43803313	K562	blood:	n/a	chr15:43803054-43803065 chr15:43803051-43803065
35	POLR2A	chr15:43801825-43803570	U87	brain:	n/a	n/a
36	POLR2A	chr15:43802412-43803144	H1-hESC	embryonic stem cell:	n/a	n/a
37	E2F4	chr15:43802176-43803373	K562	blood:	n/a	chr15:43803109-43803119 chr15:43803093-43803102
38	YY1	chr15:43802464-43803432	HepG2	liver:	n/a	chr15:43803054-43803065 chr15:43803051-43803065
39	RFX5	chr15:43802611-43803381	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr15:43802717-43803084	A549	lung:	n/a	n/a
41	YY1	chr15:43802396-43803447	SK-N-SH_RA	brain:	n/a	chr15:43803054-43803065 chr15:43803051-43803065
42	POLR2A	chr15:43802387-43803189	K562	blood:	n/a	n/a
43	POLR2A	chr15:43802367-43803108	H1-hESC	embryonic stem cell:	n/a	n/a
44	BHLHE40	chr15:43802680-43803353	GM12878	blood:	n/a	chr15:43803043-43803059 chr15:43803104-43803120 chr15:43803048-43803064
45	POLR2A	chr15:43802705-43803103	GM12891	blood:	n/a	n/a
46	POLR2A	chr15:43802474-43803242	HepG2	liver:	n/a	n/a
47	POLR2A	chr15:43802268-43804182	H1-neurons	neurons:	n/a	n/a
48	POLR2A	chr15:43802650-43803375	HUVEC	blood vessel:	n/a	n/a
49	TBP	chr15:43802488-43803317	HepG2	liver:	n/a	n/a
50	SIN3A	chr15:43802168-43804075	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:43802735-43802785	GM12891	blood:	n/a
2	chr15:43802735-43802785	HMEC	breast:	n/a
3	chr15:43802735-43802785	HRPEpiC	eye:	n/a
4	chr15:43802735-43802785	GM12892	blood:	n/a
5	chr15:43802735-43802785	BJ	skin:	n/a
6	chr15:43802735-43802785	HPAEpiC	pulmonary alveolar:	n/a
7	chr15:43802735-43802785	Hela-S3	cervix:	n/a
8	chr15:43802735-43802785	LNCaP	prostate:	n/a
9	chr15:43802735-43802785	CMK	blood:	n/a
10	chr15:43802735-43802785	HCPEpiC	choroid plexus:	n/a
11	chr15:43802735-43802785	SK-N-SH	brain:	n/a
12	chr15:43802735-43802785	IMR90	lung:	fetal
13	chr15:43802735-43802785	PFSK-1	brain:	n/a
14	chr15:43802735-43802785	HepG2	liver:	n/a
15	chr15:43802735-43802785	HRE	kidney:	n/a
16	chr15:43802735-43802785	NB4	blood:	n/a
17	chr15:43802735-43802785	K562	blood:	n/a
18	chr15:43802735-43802785	HNPCEpiC	eye:	n/a
19	chr15:43802735-43802785	SK-N-SH_RA	brain:	n/a
20	chr15:43802735-43802785	PANC-1	pancreas:	n/a
21	chr15:43802735-43802785	RPTEC	kidney:	n/a
22	chr15:43802735-43802785	T-47D	breast:	n/a
23	chr15:43802735-43802785	H1-hESC	embryonic stem cell:	embryo
24	chr15:43802735-43802785	NHBE	bronchial:	n/a
25	chr15:43802735-43802785	AG10803	skin:	n/a
26	chr15:43802735-43802785	HCT-116	colon:	n/a
27	chr15:43802735-43802785	U87	brain:	n/a
28	chr15:43802735-43802785	HCF	heart:	n/a
29	chr15:43802735-43802785	Jurkat	blood:	n/a
30	chr15:43802735-43802785	Caco-2	colon:	n/a
31	chr15:43802735-43802785	HEEpiC	esophagus:	n/a
32	chr15:43802735-43802785	HAEpiC	amniotic membrane:	n/a
33	chr15:43802735-43802785	AG09319	gingival:	n/a
34	chr15:43802735-43802785	GM06990	blood:	n/a
35	chr15:43802735-43802785	MCF10A-Er-Src	breast:	n/a
36	chr15:43802735-43802785	A549	lung:	n/a
37	chr15:43802735-43802785	HL-60	blood:	n/a
38	chr15:43802735-43802785	ECC-1	luminal epithelium:	n/a
39	chr15:43802735-43802785	SK-N-MC	brain:	n/a
40	chr15:43802735-43802785	SAEC	small airway:	n/a
41	chr15:43802735-43802785	HIPEpiC	eye:	n/a
42	chr15:43802735-43802785	GM12878	blood:	n/a
43	chr15:43802735-43802785	HEK293	kidney:	embryo
44	chr15:43802735-43802785	MCF-7	breast:	n/a
45	chr15:43802735-43802785	GM19239	blood:	n/a
46	chr15:43802735-43802785	AG04449	skin:	fetal
47	chr15:43802735-43802785	AoSMC	blood vessel:	n/a
48	chr15:43802735-43802785	AG04450	lung:	fetal
49	chr15:43802735-43802785	NT2-D1	testis:	n/a
50	chr15:43802735-43802785	HRCEpiC	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:43784031..43792065-chr15:43801022..43804774,10	K562	blood:
2	chr15:43801353..43803228-chr15:44084383..44086214,2	K562	blood:
3	15:43792489-43802874..15:44074989-44078735	K562	blood:
4	chr15:43783239..43787260-chr15:43801022..43804758,8	K562	blood:
5	chr15:43784964..43786568-chr15:43801519..43804251,2	MCF-7	breast:
6	chr15:43800445..43802853-chr15:44084383..44085884,2	K562	blood:
7	15:43792489-43802874..15:44001645-44015047	GM12878	blood:
8	chr15:43729891..43732204-chr15:43801594..43804283,2	K562	blood:
9	chr15:43621078..43623590-chr15:43801793..43804270,2	MCF-7	breast:
10	chr11:59435931..59436776-chr15:43802144..43802835,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TP53BP1-2	chr15:43802568-43802926	NONHSAT042086

Variant related genes	Relation type
MAP1A	TF binding region
MAP1A	CpG island
ENSG00000166763	Chromatin interaction
ENSG00000168806	Chromatin interaction
ENSG00000221792	Chromatin interaction
ENSG00000238494	Chromatin interaction
ENSG00000268488	Chromatin interaction
ENSG00000168803	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000140264	Chromatin interaction
ENSG00000242866	Chromatin interaction
ENSG00000067369	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv515877	chr15:43802024-43818052	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv518707	chr15:43802024-43826557	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43800800-43802800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr15:43801000-43802800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
3	chr15:43801000-43802800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr15:43801000-43804200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:43801400-43802800	Flanking Active TSS	Dnd41	blood
6	chr15:43801600-43802800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr15:43801600-43802800	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr15:43801600-43803000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:43801600-43803400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:43801600-43803600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:43801600-43803600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:43801800-43802800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr15:43801800-43802800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:43801800-43802800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:43801800-43802800	Flanking Active TSS	Fetal Muscle Leg	muscle
16	chr15:43801800-43803400	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr15:43801800-43803400	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr15:43802000-43802800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:43802000-43802800	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr15:43802000-43802800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr15:43802000-43802800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr15:43802000-43802800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:43802000-43802800	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr15:43802000-43802800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr15:43802000-43802800	Flanking Active TSS	Hela-S3	cervix
26	chr15:43802000-43802800	Flanking Active TSS	NH-A	brain
27	chr15:43802000-43802800	Flanking Active TSS	Osteobl	bone
28	chr15:43802000-43803200	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr15:43802000-43803400	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr15:43802000-43803400	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr15:43802000-43803400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:43802000-43803400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr15:43802000-43803400	Active TSS	Brain Angular Gyrus	brain
34	chr15:43802000-43803400	Active TSS	Colonic Mucosa	Colon
35	chr15:43802000-43803600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr15:43802000-43803600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:43802000-43803800	Active TSS	H9 Cell Line	embryonic stem cell
38	chr15:43802200-43802800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr15:43802200-43802800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr15:43802200-43802800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:43802200-43802800	Flanking Active TSS	Liver	Liver
42	chr15:43802200-43802800	Flanking Active TSS	HMEC	breast
43	chr15:43802200-43803200	Active TSS	Duodenum Mucosa	Duodenum
44	chr15:43802200-43803200	Active TSS	Right Atrium	heart
45	chr15:43802200-43803200	Active TSS	HSMM	muscle
46	chr15:43802200-43803200	Active TSS	K562	blood
47	chr15:43802200-43803400	Active TSS	H1 Cell Line	embryonic stem cell
48	chr15:43802200-43803400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr15:43802200-43803400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:43802200-43803400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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