Variant report

Variant	rs373200794
Chromosome Location	chr1:155554089-155554090
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	esv3431739	chr1:155514331-155664183	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv3388968	chr1:155532335-155658278	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv946418	chr1:155553397-155557607	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
6	nsv1002390	chr1:155553423-155706930	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155534600-155560400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:155534600-155565800	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:155534800-155558200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:155534800-155561800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:155534800-155565600	Weak transcription	Brain Angular Gyrus	brain
6	chr1:155534800-155568400	Weak transcription	Thymus	Thymus
7	chr1:155535000-155560000	Weak transcription	Right Ventricle	heart
8	chr1:155535000-155570400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:155535400-155564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:155538200-155560000	Weak transcription	Lung	lung
11	chr1:155540400-155565800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:155541400-155560400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:155541400-155561800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:155541400-155569000	Weak transcription	HSMMtube	muscle
15	chr1:155541600-155565600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:155541600-155565600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr1:155541600-155568400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:155541800-155560200	Weak transcription	Fetal Intestine Small	intestine
19	chr1:155542000-155565600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:155542200-155562800	Weak transcription	Fetal Muscle Leg	muscle
21	chr1:155542400-155559800	Weak transcription	Fetal Stomach	stomach
22	chr1:155545000-155560400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:155553600-155554200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:155554000-155554200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:155554000-155566400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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