Variant report

Variant	rs3732519
Chromosome Location	chr3:136047300-136047301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135913060..135914977-chr3:136047197..136049788,2	K562	blood:
2	chr3:136029722..136031537-chr3:136047190..136050098,2	MCF-7	breast:
3	chr3:135910806..135913701-chr3:136047268..136049984,2	MCF-7	breast:
4	chr3:136044505..136047310-chr3:136053454..136056821,3	MCF-7	breast:
5	chr3:136043746..136046467-chr3:136047031..136048993,2	K562	blood:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13081671	1.00[CHB][hapmap]
rs2305265	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.90[ASN][1000 genomes]
rs35352346	1.00[CHB][hapmap]
rs3732520	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3732521	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3821444	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[ASN][1000 genomes]
rs6439629	1.00[CHB][hapmap]
rs6771253	1.00[CHB][hapmap]
rs6786532	1.00[CHB][hapmap]
rs6796523	0.85[ASN][1000 genomes]
rs7615252	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633573	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812319	1.00[CHD][hapmap]
rs9831321	1.00[CHD][hapmap]
rs9853387	1.00[CHD][hapmap]
rs9860801	1.00[CHD][hapmap]
rs9868120	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4025	chr3:136017458-136065622	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135981200-136052000	Weak transcription	NH-A	brain
2	chr3:135999800-136061200	Weak transcription	Hela-S3	cervix
3	chr3:136018200-136051400	Weak transcription	A549	lung
4	chr3:136032800-136055400	Weak transcription	HUVEC	blood vessel
5	chr3:136039000-136072400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:136039200-136062400	Weak transcription	Fetal Heart	heart
7	chr3:136040200-136051200	Weak transcription	NHDF-Ad	bronchial
8	chr3:136040400-136062800	Weak transcription	Stomach Mucosa	stomach
9	chr3:136040600-136047800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:136040600-136061400	Weak transcription	Small Intestine	intestine
11	chr3:136041000-136052800	Weak transcription	Fetal Kidney	kidney
12	chr3:136042000-136048800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:136042200-136048800	Strong transcription	Primary T cells from cord blood	blood
14	chr3:136042400-136058200	Weak transcription	Psoas Muscle	Psoas
15	chr3:136042400-136078800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr3:136042600-136053200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:136042600-136072600	Strong transcription	Dnd41	blood
18	chr3:136042800-136050000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr3:136043000-136048800	Strong transcription	Brain Anterior Caudate	brain
20	chr3:136043000-136048800	Strong transcription	Duodenum Mucosa	Duodenum
21	chr3:136043200-136048800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:136043400-136048400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:136043400-136098600	Weak transcription	Fetal Brain Male	brain
24	chr3:136043600-136082000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:136043800-136048800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:136043800-136048800	Strong transcription	Fetal Intestine Small	intestine
27	chr3:136043800-136050200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:136043800-136070400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr3:136044200-136049000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:136044400-136050200	Strong transcription	Primary B cells from cord blood	blood
31	chr3:136044600-136048800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:136044800-136048800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:136044800-136048800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:136044800-136049000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:136044800-136049000	Strong transcription	Fetal Intestine Large	intestine
36	chr3:136044800-136054600	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr3:136045000-136048400	Strong transcription	Placenta	Placenta
38	chr3:136045000-136048800	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr3:136045000-136048800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:136045000-136048800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:136045000-136048800	Strong transcription	Brain Substantia Nigra	brain
42	chr3:136045000-136048800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr3:136045000-136048800	Strong transcription	Fetal Brain Female	brain
44	chr3:136045000-136048800	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:136045000-136049000	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr3:136045000-136049000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr3:136045000-136049000	Strong transcription	Brain Hippocampus Middle	brain
48	chr3:136045000-136049000	Strong transcription	Stomach Smooth Muscle	stomach
49	chr3:136045000-136049200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:136045000-136049200	Strong transcription	HepG2	liver

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