Variant report

Variant	rs3732568
Chromosome Location	chr3:134515336-134515337
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1004551	0.84[AFR][1000 genomes]
rs11918092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138212	0.89[JPT][hapmap]
rs6779220	0.89[JPT][hapmap]
rs9850491	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3732568	EPHB1	cis	cerebellum	SCAN

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134513600-134515600	Enhancers	Fetal Heart	heart
2	chr3:134513600-134516000	Bivalent/Poised TSS	HSMM	muscle
3	chr3:134513800-134515600	Active TSS	Fetal Brain Female	brain
4	chr3:134513800-134515800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:134513800-134515800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:134513800-134515800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:134513800-134515800	Active TSS	Brain Cingulate Gyrus	brain
8	chr3:134513800-134516000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:134513800-134516000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr3:134513800-134516200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:134513800-134516800	Active TSS	Brain Angular Gyrus	brain
12	chr3:134514000-134515400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:134514000-134515400	Flanking Active TSS	Pancreas	Pancrea
14	chr3:134514000-134515600	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr3:134514000-134515600	Bivalent/Poised TSS	Thymus	Thymus
16	chr3:134514000-134515600	Active TSS	NH-A	brain
17	chr3:134514000-134515800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:134514000-134515800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:134514000-134515800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr3:134514000-134515800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:134514000-134515800	Active TSS	Aorta	Aorta
22	chr3:134514000-134515800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
23	chr3:134514000-134515800	Active TSS	Fetal Kidney	kidney
24	chr3:134514000-134516000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:134514000-134516000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr3:134514000-134516000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr3:134514000-134516000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr3:134514000-134516000	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr3:134514000-134516000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:134514000-134516000	Active TSS	Left Ventricle	heart
31	chr3:134514000-134516000	Active TSS	Psoas Muscle	Psoas
32	chr3:134514000-134516000	Active TSS	Right Atrium	heart
33	chr3:134514000-134516200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
34	chr3:134514000-134516600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
35	chr3:134514000-134516600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:134514000-134516600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
37	chr3:134514000-134516600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:134514000-134516800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr3:134514200-134515400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:134514200-134515400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
41	chr3:134514200-134515600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
42	chr3:134514200-134515800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:134514200-134515800	Active TSS	Brain Substantia Nigra	brain
44	chr3:134514200-134516000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:134514200-134516000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:134514200-134516000	Active TSS	NHDF-Ad	bronchial
47	chr3:134514200-134516200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr3:134514200-134516200	Flanking Active TSS	Right Ventricle	heart
49	chr3:134514400-134515400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
50	chr3:134514400-134515600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood

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