Variant report

Variant	rs3732574
Chromosome Location	chr3:133335787-133335788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133333661..133336033-chr3:133377209..133379803,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12634591	0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1444601	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550742	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3192149	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772679	0.90[ASN][1000 genomes]
rs4261880	0.81[EUR][1000 genomes]
rs4854588	0.81[CEU][hapmap]
rs6806750	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7632134	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
2	chr3:133307200-133335800	Weak transcription	Pancreas	Pancrea
3	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
4	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
5	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
8	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:133310800-133349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:133314800-133335800	Weak transcription	HSMMtube	muscle
12	chr3:133314800-133349200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:133314800-133351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:133316600-133377600	Strong transcription	Dnd41	blood
15	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:133319000-133363800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
22	chr3:133323200-133341000	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
25	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:133324400-133338600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr3:133325000-133345000	Weak transcription	Psoas Muscle	Psoas
32	chr3:133325200-133352800	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:133325200-133353000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:133325400-133348200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:133326200-133347800	Strong transcription	Fetal Intestine Large	intestine
36	chr3:133326400-133337400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:133326400-133337600	Strong transcription	Fetal Muscle Trunk	muscle
38	chr3:133326600-133337800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:133327000-133335800	Weak transcription	NHEK	skin
40	chr3:133327000-133362400	Weak transcription	Small Intestine	intestine
41	chr3:133327400-133337000	Weak transcription	Ovary	ovary
42	chr3:133327600-133336000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr3:133327600-133338600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr3:133327600-133351600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr3:133328000-133356400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr3:133328600-133335800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr3:133329200-133342800	Weak transcription	Fetal Brain Male	brain
48	chr3:133329200-133358400	Weak transcription	Fetal Heart	heart
49	chr3:133329400-133340600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr3:133329400-133358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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