Variant report

Variant	rs373258989
Chromosome Location	chr7:127324014-127324015
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr7:127323955-127324319	GM12878	blood:	n/a	n/a
2	POLR2A	chr7:127323537-127324432	HepG2	liver:	n/a	n/a
3	EBF1	chr7:127323929-127324709	GM12878	blood:	n/a	chr7:127324333-127324342 chr7:127324331-127324344 chr7:127324083-127324096 chr7:127324085-127324094 chr7:127324085-127324094 chr7:127324084-127324094 chr7:127324331-127324342 chr7:127324332-127324342

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127322349..127324124-chr7:127326869..127328716,2	MCF-7	breast:

Variant related genes	Relation type
SND1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1031658	chr7:127266882-127376775	Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv831123	chr7:127289511-127510396	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv981781	chr7:127322449-127326404	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127293200-127326600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:127294800-127327400	Weak transcription	Fetal Kidney	kidney
3	chr7:127295400-127326400	Weak transcription	Thymus	Thymus
4	chr7:127296200-127326600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:127299000-127334400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:127304600-127326600	Weak transcription	Fetal Stomach	stomach
7	chr7:127305200-127326600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:127307000-127324200	Weak transcription	Fetal Heart	heart
9	chr7:127307000-127324200	Weak transcription	Stomach Mucosa	stomach
10	chr7:127307000-127330200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:127307800-127324400	Weak transcription	Small Intestine	intestine
12	chr7:127308200-127326600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:127308400-127326600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:127308800-127333600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:127309400-127333600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:127309600-127339600	Weak transcription	Brain Germinal Matrix	brain
17	chr7:127310600-127326400	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:127311200-127326600	Weak transcription	Hela-S3	cervix
19	chr7:127314400-127326000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:127314400-127326600	Weak transcription	Spleen	Spleen
21	chr7:127314400-127327600	Weak transcription	Brain Anterior Caudate	brain
22	chr7:127314400-127330400	Weak transcription	Esophagus	oesophagus
23	chr7:127316400-127326600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr7:127317000-127326600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:127318200-127325800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:127318200-127333800	Weak transcription	Brain Angular Gyrus	brain
27	chr7:127318600-127326200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr7:127319200-127326200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:127319200-127326200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:127319200-127326400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:127319200-127326600	Weak transcription	Lung	lung
32	chr7:127319200-127326600	Weak transcription	HSMM	muscle
33	chr7:127319200-127330400	Weak transcription	Aorta	Aorta
34	chr7:127319400-127324200	Weak transcription	NH-A	brain
35	chr7:127319400-127326200	Weak transcription	Fetal Thymus	thymus
36	chr7:127319400-127327000	Weak transcription	A549	lung
37	chr7:127319800-127326400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:127319800-127328200	Weak transcription	HSMMtube	muscle
39	chr7:127320000-127324400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:127320000-127325800	Weak transcription	Primary T cells from cord blood	blood
41	chr7:127320000-127326000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr7:127320000-127326400	Weak transcription	Dnd41	blood
43	chr7:127320000-127326600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:127320000-127326800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr7:127320000-127326800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr7:127320000-127330400	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:127320200-127326400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr7:127320400-127329600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr7:127320600-127325400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:127320800-127326400	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links