Variant report

Variant	rs373259552
Chromosome Location	chrX:138286548-138286549
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chrX:138286484-138286752	GM12892	blood:	n/a	n/a
2	UBTF	chrX:138285942-138286782	K562	blood:	n/a	n/a
3	POLR2A	chrX:138285442-138287746	MCF-7	breast:	n/a	n/a
4	POLR2A	chrX:138285813-138286685	MCF-7	breast:	n/a	n/a
5	MAX	chrX:138286261-138286594	H1-hESC	embryonic stem cell:	n/a	n/a
6	E2F6	chrX:138285774-138286805	K562	blood:	n/a	chrX:138286420-138286430 chrX:138286414-138286424 chrX:138286150-138286159 chrX:138286417-138286427 chrX:138286169-138286180
7	REST	chrX:138285098-138287705	H1-neurons	neurons:	n/a	chrX:138285921-138285934 chrX:138287111-138287131 chrX:138287233-138287246 chrX:138285181-138285194 chrX:138285745-138285758 chrX:138285179-138285189
8	E2F6	chrX:138285696-138286579	H1-hESC	embryonic stem cell:	n/a	chrX:138286420-138286430 chrX:138286414-138286424 chrX:138285744-138285753 chrX:138286150-138286159 chrX:138285744-138285756 chrX:138286417-138286427 chrX:138286169-138286180
9	MYC	chrX:138286142-138286658	MCF-7	breast:	n/a	chrX:138286585-138286595
10	POLR2A	chrX:138286004-138286791	K562	blood:	n/a	n/a
11	CTBP2	chrX:138284616-138286747	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chrX:138285873-138287837	K562	blood:	n/a	n/a
13	POLR2A	chrX:138285798-138287834	K562	blood:	n/a	n/a
14	POLR2A	chrX:138285167-138286591	H1-neurons	neurons:	n/a	n/a
15	E2F6	chrX:138285475-138286767	K562	blood:	n/a	chrX:138286420-138286430 chrX:138286414-138286424 chrX:138285744-138285753 chrX:138286150-138286159 chrX:138285744-138285756 chrX:138286417-138286427 chrX:138285550-138285560 chrX:138286169-138286180
16	POLR2A	chrX:138286178-138286618	MCF10A-Er-Src	breast:	n/a	n/a
17	MAX	chrX:138285689-138286558	K562	blood:	n/a	n/a
18	HMGN3	chrX:138285762-138286638	K562	blood:	n/a	n/a
19	CCNT2	chrX:138286505-138286778	K562	blood:	n/a	n/a
20	MAX	chrX:138285770-138286592	A549	lung:	n/a	n/a
21	UBTF	chrX:138285860-138286723	K562	blood:	n/a	n/a
22	ZNF263	chrX:138285808-138286686	HEK293-T-REx	kidney:	n/a	chrX:138286024-138286033 chrX:138286124-138286133

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:138285411..138288031-chrX:138303226..138305707,3	K562	blood:

Variant related genes	Relation type
FGF13	TF binding region
ENSG00000129682	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525867	chrX:137580983-138439843	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv533984	chrX:137938683-138556308	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv532935	chrX:138281469-138764448	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3346694	chrX:138283686-138289084	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3447668	chrX:138284786-138286884	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138283000-138288600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chrX:138284400-138287800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chrX:138284400-138288400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chrX:138284600-138287800	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chrX:138284600-138288000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
6	chrX:138284600-138288200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chrX:138284600-138288600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chrX:138284600-138288800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chrX:138284600-138288800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chrX:138284800-138287800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chrX:138284800-138287800	Active TSS	K562	blood
12	chrX:138284800-138288000	Active TSS	Psoas Muscle	Psoas
13	chrX:138284800-138288400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chrX:138284800-138288600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chrX:138285000-138287400	Active TSS	NH-A	brain
16	chrX:138285000-138287800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chrX:138285200-138287000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chrX:138285200-138287000	Bivalent/Poised TSS	Colonic Mucosa	Colon
19	chrX:138285200-138287600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
20	chrX:138285200-138287800	Active TSS	Brain Anterior Caudate	brain
21	chrX:138285200-138287800	Active TSS	Brain Germinal Matrix	brain
22	chrX:138285200-138288000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chrX:138285200-138288400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chrX:138285200-138288600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chrX:138285400-138287600	Active TSS	Esophagus	oesophagus
26	chrX:138285400-138287600	Active TSS	Gastric	stomach
27	chrX:138285400-138287800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chrX:138285400-138288000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chrX:138285400-138288000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chrX:138285400-138288000	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
31	chrX:138285400-138288000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
32	chrX:138285400-138288000	Active TSS	Ovary	ovary
33	chrX:138285400-138288000	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chrX:138285600-138287000	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
35	chrX:138285600-138287800	Bivalent/Poised TSS	Fetal Stomach	stomach
36	chrX:138285600-138288000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chrX:138285600-138288000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chrX:138285600-138288000	Active TSS	Right Ventricle	heart
39	chrX:138285800-138286800	Enhancers	Primary B cells from peripheral blood	blood
40	chrX:138285800-138286800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chrX:138285800-138286800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
42	chrX:138285800-138287200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chrX:138285800-138287200	Flanking Active TSS	Liver	Liver
44	chrX:138285800-138287400	Active TSS	Muscle Satellite Cultured Cells	--
45	chrX:138285800-138287400	Bivalent/Poised TSS	NHEK	skin
46	chrX:138285800-138287800	Active TSS	Primary neutrophils fromperipheralblood	blood
47	chrX:138285800-138287800	Active TSS	Brain Angular Gyrus	brain
48	chrX:138285800-138287800	Active TSS	Brain Substantia Nigra	brain
49	chrX:138285800-138287800	Active TSS	Duodenum Mucosa	Duodenum
50	chrX:138285800-138287800	Active TSS	HSMMtube	muscle

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