Variant report

Variant	rs3733036
Chromosome Location	chr3:52960294-52960295
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52954329..52958232-chr3:52959558..52962152,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17052697	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52931800-52965400	Weak transcription	Spleen	Spleen
2	chr3:52932000-52964000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:52932000-52970000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:52932000-52978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:52932200-52961400	Weak transcription	HSMMtube	muscle
6	chr3:52932200-52961800	Weak transcription	A549	lung
7	chr3:52932200-52963000	Weak transcription	Stomach Mucosa	stomach
8	chr3:52932200-52966400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:52932200-52967800	Weak transcription	HSMM	muscle
10	chr3:52932200-52968600	Weak transcription	Osteobl	bone
11	chr3:52932200-52968800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:52932200-52968800	Weak transcription	Fetal Brain Male	brain
13	chr3:52932400-52968600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:52932400-52968600	Weak transcription	NHDF-Ad	bronchial
15	chr3:52932400-52968800	Weak transcription	NHEK	skin
16	chr3:52935600-52968600	Strong transcription	Dnd41	blood
17	chr3:52939600-52961200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:52941800-52961600	Weak transcription	Colonic Mucosa	Colon
19	chr3:52941800-52980200	Weak transcription	Psoas Muscle	Psoas
20	chr3:52943600-52962400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:52943600-52964000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:52947400-52968000	Weak transcription	Fetal Lung	lung
23	chr3:52947600-52960800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr3:52947600-52963000	Weak transcription	Fetal Heart	heart
25	chr3:52949000-52962400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:52949000-52968800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:52949200-52962800	Weak transcription	K562	blood
28	chr3:52950000-52966600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:52951200-52966400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:52951400-52964400	Strong transcription	Fetal Intestine Large	intestine
31	chr3:52952000-52968600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr3:52952800-52965600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:52953000-52963000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr3:52953400-52961400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr3:52953400-52961400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr3:52953800-52964600	Weak transcription	Fetal Kidney	kidney
37	chr3:52954000-52962000	Weak transcription	HMEC	breast
38	chr3:52954000-52964000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:52954000-53012200	Weak transcription	Esophagus	oesophagus
40	chr3:52954200-52961600	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr3:52954200-52961800	Weak transcription	Brain Angular Gyrus	brain
42	chr3:52954200-52961800	Weak transcription	Right Ventricle	heart
43	chr3:52954200-53012200	Weak transcription	Pancreas	Pancrea
44	chr3:52954400-52963600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr3:52954400-52964800	Weak transcription	Ovary	ovary
46	chr3:52954400-52968600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:52954600-52960800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:52954600-52960800	Weak transcription	GM12878-XiMat	blood
49	chr3:52954600-52961800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr3:52954600-52961800	Weak transcription	Thymus	Thymus

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